Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09320

Experiment: rhizosphere sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09310 and ABZR87_RS09315 are separated by 7 nucleotidesABZR87_RS09315 and ABZR87_RS09320 are separated by 10 nucleotidesABZR87_RS09320 and ABZR87_RS09325 are separated by 75 nucleotides ABZR87_RS09310: ABZR87_RS09310 - TonB-dependent siderophore receptor, at 1,972,315 to 1,974,423 _RS09310 ABZR87_RS09315: ABZR87_RS09315 - slipin family protein, at 1,974,431 to 1,975,189 _RS09315 ABZR87_RS09320: ABZR87_RS09320 - nodulation protein NfeD, at 1,975,200 to 1,976,579 _RS09320 ABZR87_RS09325: ABZR87_RS09325 - LysR family transcriptional regulator, at 1,976,655 to 1,977,563 _RS09325 Position (kb) 1975 1976 1977Strain fitness (log2 ratio) -3 -2 -1 0 1at 1974.275 kb on - strandat 1974.275 kb on - strandat 1974.464 kb on + strandat 1974.464 kb on + strandat 1974.465 kb on - strandat 1974.465 kb on - strandat 1974.465 kb on - strandat 1974.534 kb on + strand, within ABZR87_RS09315at 1974.588 kb on - strand, within ABZR87_RS09315at 1974.921 kb on + strand, within ABZR87_RS09315at 1974.922 kb on - strand, within ABZR87_RS09315at 1974.947 kb on + strand, within ABZR87_RS09315at 1974.947 kb on + strand, within ABZR87_RS09315at 1974.947 kb on + strand, within ABZR87_RS09315at 1974.948 kb on - strand, within ABZR87_RS09315at 1974.948 kb on - strand, within ABZR87_RS09315at 1974.948 kb on - strand, within ABZR87_RS09315at 1974.948 kb on - strand, within ABZR87_RS09315at 1975.007 kb on + strand, within ABZR87_RS09315at 1975.007 kb on + strand, within ABZR87_RS09315at 1975.007 kb on + strand, within ABZR87_RS09315at 1975.008 kb on - strand, within ABZR87_RS09315at 1975.008 kb on - strand, within ABZR87_RS09315at 1975.104 kb on + strand, within ABZR87_RS09315at 1975.182 kb on + strandat 1975.182 kb on + strandat 1975.183 kb on - strandat 1975.524 kb on - strand, within ABZR87_RS09320at 1975.651 kb on + strand, within ABZR87_RS09320at 1975.652 kb on - strand, within ABZR87_RS09320at 1975.652 kb on - strand, within ABZR87_RS09320at 1975.652 kb on - strand, within ABZR87_RS09320at 1975.679 kb on - strand, within ABZR87_RS09320at 1975.760 kb on - strand, within ABZR87_RS09320at 1975.760 kb on - strand, within ABZR87_RS09320at 1976.062 kb on + strand, within ABZR87_RS09320at 1976.062 kb on + strand, within ABZR87_RS09320at 1976.062 kb on + strand, within ABZR87_RS09320at 1976.062 kb on + strand, within ABZR87_RS09320at 1976.062 kb on + strand, within ABZR87_RS09320at 1976.063 kb on - strand, within ABZR87_RS09320at 1976.063 kb on - strand, within ABZR87_RS09320at 1976.063 kb on - strand, within ABZR87_RS09320at 1976.063 kb on - strand, within ABZR87_RS09320at 1976.063 kb on - strand, within ABZR87_RS09320at 1976.245 kb on + strand, within ABZR87_RS09320at 1976.245 kb on + strand, within ABZR87_RS09320at 1976.245 kb on + strand, within ABZR87_RS09320at 1976.245 kb on + strand, within ABZR87_RS09320at 1976.246 kb on - strand, within ABZR87_RS09320at 1976.246 kb on - strand, within ABZR87_RS09320at 1976.254 kb on + strand, within ABZR87_RS09320at 1976.254 kb on - strand, within ABZR87_RS09320at 1976.255 kb on - strand, within ABZR87_RS09320at 1976.255 kb on - strand, within ABZR87_RS09320at 1976.255 kb on - strand, within ABZR87_RS09320at 1976.255 kb on - strand, within ABZR87_RS09320at 1976.255 kb on - strand, within ABZR87_RS09320at 1976.296 kb on + strand, within ABZR87_RS09320at 1976.296 kb on + strand, within ABZR87_RS09320at 1976.297 kb on - strand, within ABZR87_RS09320at 1976.297 kb on - strand, within ABZR87_RS09320at 1976.372 kb on + strand, within ABZR87_RS09320at 1976.373 kb on - strand, within ABZR87_RS09320at 1976.438 kb on - strand, within ABZR87_RS09320at 1976.438 kb on - strand, within ABZR87_RS09320at 1976.642 kb on - strandat 1976.657 kb on - strandat 1976.825 kb on + strand, within ABZR87_RS09325at 1976.825 kb on + strand, within ABZR87_RS09325at 1976.825 kb on + strand, within ABZR87_RS09325at 1976.825 kb on + strand, within ABZR87_RS09325at 1976.826 kb on - strand, within ABZR87_RS09325at 1976.826 kb on - strand, within ABZR87_RS09325at 1976.826 kb on - strand, within ABZR87_RS09325at 1976.828 kb on - strand, within ABZR87_RS09325at 1976.853 kb on + strand, within ABZR87_RS09325at 1976.899 kb on + strand, within ABZR87_RS09325at 1976.899 kb on + strand, within ABZR87_RS09325at 1976.899 kb on + strand, within ABZR87_RS09325at 1976.899 kb on + strand, within ABZR87_RS09325at 1976.900 kb on - strand, within ABZR87_RS09325at 1977.012 kb on + strand, within ABZR87_RS09325at 1977.211 kb on - strand, within ABZR87_RS09325at 1977.211 kb on - strand, within ABZR87_RS09325at 1977.211 kb on - strand, within ABZR87_RS09325at 1977.287 kb on + strand, within ABZR87_RS09325at 1977.287 kb on + strand, within ABZR87_RS09325at 1977.288 kb on - strand, within ABZR87_RS09325at 1977.364 kb on + strand, within ABZR87_RS09325at 1977.365 kb on - strand, within ABZR87_RS09325at 1977.365 kb on - strand, within ABZR87_RS09325at 1977.365 kb on - strand, within ABZR87_RS09325at 1977.568 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 6; outgrowth in LB
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1,974,275 - -0.2
1,974,275 - +0.6
1,974,464 + +0.2
1,974,464 + -0.9
1,974,465 - +0.9
1,974,465 - +1.0
1,974,465 - +1.1
1,974,534 + ABZR87_RS09315 0.14 -1.9
1,974,588 - ABZR87_RS09315 0.21 -1.0
1,974,921 + ABZR87_RS09315 0.65 -0.7
1,974,922 - ABZR87_RS09315 0.65 +0.5
1,974,947 + ABZR87_RS09315 0.68 -0.9
1,974,947 + ABZR87_RS09315 0.68 -0.4
1,974,947 + ABZR87_RS09315 0.68 -0.8
1,974,948 - ABZR87_RS09315 0.68 +0.0
1,974,948 - ABZR87_RS09315 0.68 +0.9
1,974,948 - ABZR87_RS09315 0.68 -0.5
1,974,948 - ABZR87_RS09315 0.68 -0.1
1,975,007 + ABZR87_RS09315 0.76 +0.2
1,975,007 + ABZR87_RS09315 0.76 +0.5
1,975,007 + ABZR87_RS09315 0.76 -1.1
1,975,008 - ABZR87_RS09315 0.76 +0.2
1,975,008 - ABZR87_RS09315 0.76 +0.3
1,975,104 + ABZR87_RS09315 0.89 +0.7
1,975,182 + -0.3
1,975,182 + -0.9
1,975,183 - -0.2
1,975,524 - ABZR87_RS09320 0.23 -0.5
1,975,651 + ABZR87_RS09320 0.33 +1.1
1,975,652 - ABZR87_RS09320 0.33 +0.0
1,975,652 - ABZR87_RS09320 0.33 +0.9
1,975,652 - ABZR87_RS09320 0.33 +0.3
1,975,679 - ABZR87_RS09320 0.35 +0.5
1,975,760 - ABZR87_RS09320 0.41 -0.2
1,975,760 - ABZR87_RS09320 0.41 -1.4
1,976,062 + ABZR87_RS09320 0.62 +0.6
1,976,062 + ABZR87_RS09320 0.62 +0.4
1,976,062 + ABZR87_RS09320 0.62 -0.1
1,976,062 + ABZR87_RS09320 0.62 +0.8
1,976,062 + ABZR87_RS09320 0.62 +1.3
1,976,063 - ABZR87_RS09320 0.63 +0.7
1,976,063 - ABZR87_RS09320 0.63 -0.1
1,976,063 - ABZR87_RS09320 0.63 +0.9
1,976,063 - ABZR87_RS09320 0.63 +0.1
1,976,063 - ABZR87_RS09320 0.63 -0.5
1,976,245 + ABZR87_RS09320 0.76 -0.2
1,976,245 + ABZR87_RS09320 0.76 -0.6
1,976,245 + ABZR87_RS09320 0.76 -0.9
1,976,245 + ABZR87_RS09320 0.76 +0.8
1,976,246 - ABZR87_RS09320 0.76 -0.8
1,976,246 - ABZR87_RS09320 0.76 +0.1
1,976,254 + ABZR87_RS09320 0.76 +0.4
1,976,254 - ABZR87_RS09320 0.76 -0.2
1,976,255 - ABZR87_RS09320 0.76 +1.6
1,976,255 - ABZR87_RS09320 0.76 +0.4
1,976,255 - ABZR87_RS09320 0.76 +0.5
1,976,255 - ABZR87_RS09320 0.76 -0.5
1,976,255 - ABZR87_RS09320 0.76 +0.1
1,976,296 + ABZR87_RS09320 0.79 -0.6
1,976,296 + ABZR87_RS09320 0.79 +0.8
1,976,297 - ABZR87_RS09320 0.79 +0.8
1,976,297 - ABZR87_RS09320 0.79 -0.5
1,976,372 + ABZR87_RS09320 0.85 -0.1
1,976,373 - ABZR87_RS09320 0.85 -1.0
1,976,438 - ABZR87_RS09320 0.90 +1.3
1,976,438 - ABZR87_RS09320 0.90 -3.0
1,976,642 - +0.1
1,976,657 - +0.1
1,976,825 + ABZR87_RS09325 0.19 +0.2
1,976,825 + ABZR87_RS09325 0.19 +1.3
1,976,825 + ABZR87_RS09325 0.19 +0.4
1,976,825 + ABZR87_RS09325 0.19 -0.8
1,976,826 - ABZR87_RS09325 0.19 +1.1
1,976,826 - ABZR87_RS09325 0.19 +0.7
1,976,826 - ABZR87_RS09325 0.19 +1.5
1,976,828 - ABZR87_RS09325 0.19 -0.4
1,976,853 + ABZR87_RS09325 0.22 -0.2
1,976,899 + ABZR87_RS09325 0.27 +0.3
1,976,899 + ABZR87_RS09325 0.27 -0.1
1,976,899 + ABZR87_RS09325 0.27 +0.2
1,976,899 + ABZR87_RS09325 0.27 +1.0
1,976,900 - ABZR87_RS09325 0.27 -0.1
1,977,012 + ABZR87_RS09325 0.39 -0.5
1,977,211 - ABZR87_RS09325 0.61 -0.9
1,977,211 - ABZR87_RS09325 0.61 -0.2
1,977,211 - ABZR87_RS09325 0.61 +0.4
1,977,287 + ABZR87_RS09325 0.70 -1.0
1,977,287 + ABZR87_RS09325 0.70 +0.2
1,977,288 - ABZR87_RS09325 0.70 +1.3
1,977,364 + ABZR87_RS09325 0.78 -0.3
1,977,365 - ABZR87_RS09325 0.78 +0.9
1,977,365 - ABZR87_RS09325 0.78 -1.4
1,977,365 - ABZR87_RS09325 0.78 +0.2
1,977,568 + -0.3

Or see this region's nucleotide sequence