Experiment: rhizosphere sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS06990 and ABZR87_RS06995 are separated by 78 nucleotides ABZR87_RS06995 and ABZR87_RS07000 are separated by 50 nucleotides ABZR87_RS07000 and ABZR87_RS07005 are separated by 14 nucleotides ABZR87_RS07005 and ABZR87_RS07010 overlap by 1 nucleotides
ABZR87_RS06990: ABZR87_RS06990 - ribose-phosphate pyrophosphokinase, at 1,476,679 to 1,477,629
_RS06990
ABZR87_RS06995: ABZR87_RS06995 - tRNA-Gln, at 1,477,708 to 1,477,784
_RS06995
ABZR87_RS07000: ABZR87_RS07000 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 1,477,835 to 1,478,704
_RS07000
ABZR87_RS07005: ABZR87_RS07005 - lipoprotein insertase outer membrane protein LolB, at 1,478,719 to 1,479,342
_RS07005
ABZR87_RS07010: ABZR87_RS07010 - tetratricopeptide repeat protein, at 1,479,342 to 1,481,279
_RS07010
Position (kb) 1477
1478
1479 Strain fitness (log2 ratio) -1
0
1
2
3 at 1477.697 kb on - strand at 1477.697 kb on - strand at 1477.697 kb on - strand at 1477.697 kb on - strand at 1478.721 kb on - strand at 1478.721 kb on - strand at 1478.843 kb on + strand, within ABZR87_RS07005 at 1478.844 kb on - strand, within ABZR87_RS07005 at 1478.844 kb on - strand, within ABZR87_RS07005 at 1479.180 kb on - strand, within ABZR87_RS07005 at 1479.180 kb on - strand, within ABZR87_RS07005 at 1479.608 kb on - strand, within ABZR87_RS07010 at 1479.608 kb on - strand, within ABZR87_RS07010 at 1479.608 kb on - strand, within ABZR87_RS07010 at 1479.608 kb on - strand, within ABZR87_RS07010 at 1479.608 kb on - strand, within ABZR87_RS07010 at 1479.608 kb on - strand, within ABZR87_RS07010 at 1479.608 kb on - strand, within ABZR87_RS07010 at 1479.608 kb on - strand, within ABZR87_RS07010
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 6; outgrowth in LB remove 1,477,697 - +1.9 1,477,697 - +1.3 1,477,697 - -0.2 1,477,697 - -0.4 1,478,721 - -0.9 1,478,721 - -0.4 1,478,843 + ABZR87_RS07005 0.20 +0.2 1,478,844 - ABZR87_RS07005 0.20 -1.3 1,478,844 - ABZR87_RS07005 0.20 +0.7 1,479,180 - ABZR87_RS07005 0.74 -0.3 1,479,180 - ABZR87_RS07005 0.74 +0.9 1,479,608 - ABZR87_RS07010 0.14 -1.1 1,479,608 - ABZR87_RS07010 0.14 +0.2 1,479,608 - ABZR87_RS07010 0.14 -0.8 1,479,608 - ABZR87_RS07010 0.14 -1.3 1,479,608 - ABZR87_RS07010 0.14 +0.5 1,479,608 - ABZR87_RS07010 0.14 -1.2 1,479,608 - ABZR87_RS07010 0.14 -0.3 1,479,608 - ABZR87_RS07010 0.14 +2.9
Or see this region's nucleotide sequence