Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04525

Experiment: rhizosphere sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04520 and ABZR87_RS04525 are separated by 655 nucleotidesABZR87_RS04525 and ABZR87_RS04530 are separated by 137 nucleotides ABZR87_RS04520: ABZR87_RS04520 - potassium-transporting ATPase subunit KdpC, at 943,251 to 943,874 _RS04520 ABZR87_RS04525: ABZR87_RS04525 - sensor histidine kinase KdpD, at 944,530 to 947,346 _RS04525 ABZR87_RS04530: ABZR87_RS04530 - MetQ/NlpA family lipoprotein, at 947,484 to 948,290 _RS04530 Position (kb) 944 945 946 947 948Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 943.533 kb on + strand, within ABZR87_RS04520at 943.533 kb on + strand, within ABZR87_RS04520at 943.533 kb on + strand, within ABZR87_RS04520at 943.534 kb on - strand, within ABZR87_RS04520at 943.534 kb on - strand, within ABZR87_RS04520at 943.571 kb on + strand, within ABZR87_RS04520at 943.700 kb on + strand, within ABZR87_RS04520at 943.700 kb on + strand, within ABZR87_RS04520at 943.701 kb on - strand, within ABZR87_RS04520at 943.701 kb on - strand, within ABZR87_RS04520at 943.720 kb on - strand, within ABZR87_RS04520at 943.720 kb on - strand, within ABZR87_RS04520at 943.826 kb on + strandat 943.826 kb on + strandat 943.826 kb on + strandat 943.827 kb on - strandat 943.979 kb on + strandat 944.222 kb on + strandat 944.222 kb on + strandat 944.223 kb on - strandat 944.297 kb on - strandat 944.297 kb on - strandat 944.297 kb on - strandat 944.297 kb on - strandat 944.522 kb on + strandat 944.522 kb on + strandat 944.522 kb on + strandat 944.523 kb on - strandat 944.523 kb on - strandat 944.620 kb on + strandat 944.621 kb on - strandat 944.621 kb on - strandat 944.642 kb on + strandat 944.642 kb on + strandat 944.642 kb on + strandat 944.643 kb on - strandat 944.654 kb on - strandat 944.654 kb on - strandat 944.791 kb on + strandat 944.792 kb on - strandat 944.792 kb on - strandat 944.792 kb on - strandat 944.792 kb on - strandat 945.127 kb on + strand, within ABZR87_RS04525at 945.127 kb on + strand, within ABZR87_RS04525at 945.127 kb on + strand, within ABZR87_RS04525at 945.127 kb on + strand, within ABZR87_RS04525at 945.128 kb on - strand, within ABZR87_RS04525at 945.128 kb on - strand, within ABZR87_RS04525at 945.128 kb on - strand, within ABZR87_RS04525at 945.128 kb on - strand, within ABZR87_RS04525at 945.128 kb on - strand, within ABZR87_RS04525at 945.128 kb on - strand, within ABZR87_RS04525at 945.128 kb on - strand, within ABZR87_RS04525at 945.128 kb on - strand, within ABZR87_RS04525at 945.247 kb on + strand, within ABZR87_RS04525at 945.526 kb on + strand, within ABZR87_RS04525at 945.526 kb on + strand, within ABZR87_RS04525at 945.527 kb on - strand, within ABZR87_RS04525at 945.527 kb on - strand, within ABZR87_RS04525at 945.527 kb on - strand, within ABZR87_RS04525at 945.528 kb on + strand, within ABZR87_RS04525at 945.528 kb on + strand, within ABZR87_RS04525at 945.529 kb on - strand, within ABZR87_RS04525at 945.529 kb on - strand, within ABZR87_RS04525at 945.826 kb on + strand, within ABZR87_RS04525at 945.826 kb on + strand, within ABZR87_RS04525at 945.827 kb on - strand, within ABZR87_RS04525at 945.827 kb on - strand, within ABZR87_RS04525at 945.827 kb on - strand, within ABZR87_RS04525at 945.827 kb on - strand, within ABZR87_RS04525at 945.827 kb on - strand, within ABZR87_RS04525at 945.844 kb on + strand, within ABZR87_RS04525at 945.844 kb on + strand, within ABZR87_RS04525at 945.844 kb on + strand, within ABZR87_RS04525at 945.845 kb on - strand, within ABZR87_RS04525at 945.845 kb on - strand, within ABZR87_RS04525at 945.845 kb on - strand, within ABZR87_RS04525at 945.845 kb on - strand, within ABZR87_RS04525at 945.845 kb on - strand, within ABZR87_RS04525at 946.051 kb on + strand, within ABZR87_RS04525at 946.051 kb on + strand, within ABZR87_RS04525at 946.052 kb on - strand, within ABZR87_RS04525at 946.168 kb on + strand, within ABZR87_RS04525at 946.168 kb on + strand, within ABZR87_RS04525at 946.168 kb on + strand, within ABZR87_RS04525at 946.169 kb on - strand, within ABZR87_RS04525at 946.169 kb on - strand, within ABZR87_RS04525at 946.384 kb on + strand, within ABZR87_RS04525at 946.384 kb on + strand, within ABZR87_RS04525at 946.384 kb on + strand, within ABZR87_RS04525at 946.385 kb on - strand, within ABZR87_RS04525at 946.419 kb on + strand, within ABZR87_RS04525at 946.419 kb on + strand, within ABZR87_RS04525at 946.419 kb on + strand, within ABZR87_RS04525at 946.420 kb on - strand, within ABZR87_RS04525at 946.444 kb on + strand, within ABZR87_RS04525at 946.444 kb on + strand, within ABZR87_RS04525at 946.444 kb on + strand, within ABZR87_RS04525at 946.444 kb on + strand, within ABZR87_RS04525at 946.444 kb on + strand, within ABZR87_RS04525at 946.444 kb on + strand, within ABZR87_RS04525at 946.444 kb on + strand, within ABZR87_RS04525at 946.444 kb on + strand, within ABZR87_RS04525at 946.444 kb on + strand, within ABZR87_RS04525at 946.444 kb on + strand, within ABZR87_RS04525at 946.445 kb on - strand, within ABZR87_RS04525at 946.445 kb on - strand, within ABZR87_RS04525at 946.588 kb on + strand, within ABZR87_RS04525at 946.588 kb on + strand, within ABZR87_RS04525at 946.588 kb on + strand, within ABZR87_RS04525at 946.588 kb on + strand, within ABZR87_RS04525at 946.588 kb on + strand, within ABZR87_RS04525at 946.589 kb on - strand, within ABZR87_RS04525at 946.589 kb on - strand, within ABZR87_RS04525at 947.370 kb on + strandat 947.370 kb on + strandat 947.371 kb on - strandat 947.371 kb on - strandat 947.371 kb on - strandat 947.371 kb on - strandat 947.371 kb on - strandat 947.398 kb on + strandat 947.399 kb on - strandat 947.410 kb on + strandat 947.411 kb on - strandat 947.677 kb on - strand, within ABZR87_RS04530at 947.772 kb on + strand, within ABZR87_RS04530at 947.772 kb on + strand, within ABZR87_RS04530at 947.773 kb on - strand, within ABZR87_RS04530at 947.773 kb on - strand, within ABZR87_RS04530at 947.773 kb on - strand, within ABZR87_RS04530at 947.773 kb on - strand, within ABZR87_RS04530at 947.799 kb on + strand, within ABZR87_RS04530at 947.799 kb on + strand, within ABZR87_RS04530at 947.799 kb on + strand, within ABZR87_RS04530at 947.799 kb on + strand, within ABZR87_RS04530at 947.800 kb on - strand, within ABZR87_RS04530at 947.800 kb on - strand, within ABZR87_RS04530at 947.800 kb on - strand, within ABZR87_RS04530at 947.800 kb on - strand, within ABZR87_RS04530at 947.800 kb on - strand, within ABZR87_RS04530at 947.800 kb on - strand, within ABZR87_RS04530at 947.800 kb on - strand, within ABZR87_RS04530at 947.800 kb on - strand, within ABZR87_RS04530at 947.820 kb on + strand, within ABZR87_RS04530at 947.820 kb on + strand, within ABZR87_RS04530at 947.821 kb on - strand, within ABZR87_RS04530at 947.821 kb on - strand, within ABZR87_RS04530at 948.087 kb on + strand, within ABZR87_RS04530at 948.088 kb on - strand, within ABZR87_RS04530at 948.154 kb on - strand, within ABZR87_RS04530at 948.222 kb on + strandat 948.222 kb on + strandat 948.223 kb on - strandat 948.223 kb on - strandat 948.288 kb on + strandat 948.289 kb on - strandat 948.301 kb on + strandat 948.301 kb on + strandat 948.302 kb on - strandat 948.313 kb on + strandat 948.313 kb on + strandat 948.314 kb on - strandat 948.314 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 6; outgrowth in LB
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943,533 + ABZR87_RS04520 0.45 -2.3
943,533 + ABZR87_RS04520 0.45 -0.2
943,533 + ABZR87_RS04520 0.45 +0.0
943,534 - ABZR87_RS04520 0.45 +0.4
943,534 - ABZR87_RS04520 0.45 +0.3
943,571 + ABZR87_RS04520 0.51 -0.4
943,700 + ABZR87_RS04520 0.72 +1.0
943,700 + ABZR87_RS04520 0.72 +0.4
943,701 - ABZR87_RS04520 0.72 -1.4
943,701 - ABZR87_RS04520 0.72 -0.4
943,720 - ABZR87_RS04520 0.75 -0.0
943,720 - ABZR87_RS04520 0.75 -1.4
943,826 + +0.3
943,826 + +0.9
943,826 + +2.9
943,827 - -0.1
943,979 + -0.5
944,222 + +1.2
944,222 + +0.9
944,223 - -0.2
944,297 - +0.8
944,297 - +1.2
944,297 - -0.0
944,297 - -0.6
944,522 + -0.1
944,522 + -2.1
944,522 + -0.6
944,523 - +0.2
944,523 - +0.2
944,620 + +0.6
944,621 - -0.4
944,621 - +0.0
944,642 + +0.8
944,642 + -0.3
944,642 + +0.1
944,643 - +0.6
944,654 - +0.0
944,654 - +0.7
944,791 + +0.3
944,792 - -0.7
944,792 - -0.0
944,792 - -1.0
944,792 - -0.1
945,127 + ABZR87_RS04525 0.21 +1.6
945,127 + ABZR87_RS04525 0.21 -1.0
945,127 + ABZR87_RS04525 0.21 +0.1
945,127 + ABZR87_RS04525 0.21 +0.6
945,128 - ABZR87_RS04525 0.21 +0.1
945,128 - ABZR87_RS04525 0.21 -0.5
945,128 - ABZR87_RS04525 0.21 +0.5
945,128 - ABZR87_RS04525 0.21 -0.5
945,128 - ABZR87_RS04525 0.21 +0.2
945,128 - ABZR87_RS04525 0.21 +0.1
945,128 - ABZR87_RS04525 0.21 -0.6
945,128 - ABZR87_RS04525 0.21 -0.7
945,247 + ABZR87_RS04525 0.25 -0.1
945,526 + ABZR87_RS04525 0.35 +0.5
945,526 + ABZR87_RS04525 0.35 -1.8
945,527 - ABZR87_RS04525 0.35 -1.1
945,527 - ABZR87_RS04525 0.35 -0.4
945,527 - ABZR87_RS04525 0.35 +1.1
945,528 + ABZR87_RS04525 0.35 -0.9
945,528 + ABZR87_RS04525 0.35 +1.2
945,529 - ABZR87_RS04525 0.35 -0.2
945,529 - ABZR87_RS04525 0.35 +0.9
945,826 + ABZR87_RS04525 0.46 -0.6
945,826 + ABZR87_RS04525 0.46 -0.4
945,827 - ABZR87_RS04525 0.46 +0.7
945,827 - ABZR87_RS04525 0.46 -0.2
945,827 - ABZR87_RS04525 0.46 +0.5
945,827 - ABZR87_RS04525 0.46 -0.2
945,827 - ABZR87_RS04525 0.46 -0.5
945,844 + ABZR87_RS04525 0.47 -2.4
945,844 + ABZR87_RS04525 0.47 -0.3
945,844 + ABZR87_RS04525 0.47 -0.7
945,845 - ABZR87_RS04525 0.47 +0.0
945,845 - ABZR87_RS04525 0.47 -1.7
945,845 - ABZR87_RS04525 0.47 -0.1
945,845 - ABZR87_RS04525 0.47 +0.0
945,845 - ABZR87_RS04525 0.47 +0.6
946,051 + ABZR87_RS04525 0.54 -0.1
946,051 + ABZR87_RS04525 0.54 +0.4
946,052 - ABZR87_RS04525 0.54 -1.7
946,168 + ABZR87_RS04525 0.58 -1.5
946,168 + ABZR87_RS04525 0.58 -0.5
946,168 + ABZR87_RS04525 0.58 -0.4
946,169 - ABZR87_RS04525 0.58 -0.6
946,169 - ABZR87_RS04525 0.58 -0.3
946,384 + ABZR87_RS04525 0.66 +0.2
946,384 + ABZR87_RS04525 0.66 -0.1
946,384 + ABZR87_RS04525 0.66 -0.3
946,385 - ABZR87_RS04525 0.66 -2.9
946,419 + ABZR87_RS04525 0.67 -0.2
946,419 + ABZR87_RS04525 0.67 -1.5
946,419 + ABZR87_RS04525 0.67 +0.7
946,420 - ABZR87_RS04525 0.67 -0.4
946,444 + ABZR87_RS04525 0.68 -3.5
946,444 + ABZR87_RS04525 0.68 +0.1
946,444 + ABZR87_RS04525 0.68 +0.4
946,444 + ABZR87_RS04525 0.68 -0.5
946,444 + ABZR87_RS04525 0.68 -0.0
946,444 + ABZR87_RS04525 0.68 +1.1
946,444 + ABZR87_RS04525 0.68 -0.1
946,444 + ABZR87_RS04525 0.68 -0.8
946,444 + ABZR87_RS04525 0.68 +0.8
946,444 + ABZR87_RS04525 0.68 -1.6
946,445 - ABZR87_RS04525 0.68 +0.6
946,445 - ABZR87_RS04525 0.68 +0.2
946,588 + ABZR87_RS04525 0.73 -0.3
946,588 + ABZR87_RS04525 0.73 -0.8
946,588 + ABZR87_RS04525 0.73 -1.3
946,588 + ABZR87_RS04525 0.73 -0.4
946,588 + ABZR87_RS04525 0.73 -0.3
946,589 - ABZR87_RS04525 0.73 +0.5
946,589 - ABZR87_RS04525 0.73 -1.2
947,370 + +0.6
947,370 + +0.4
947,371 - -0.6
947,371 - -0.1
947,371 - -0.7
947,371 - +0.4
947,371 - +0.7
947,398 + -0.5
947,399 - +0.8
947,410 + +0.5
947,411 - -0.5
947,677 - ABZR87_RS04530 0.24 -0.3
947,772 + ABZR87_RS04530 0.36 +5.3
947,772 + ABZR87_RS04530 0.36 +0.6
947,773 - ABZR87_RS04530 0.36 +0.2
947,773 - ABZR87_RS04530 0.36 -1.9
947,773 - ABZR87_RS04530 0.36 +0.5
947,773 - ABZR87_RS04530 0.36 +0.1
947,799 + ABZR87_RS04530 0.39 -0.6
947,799 + ABZR87_RS04530 0.39 +0.0
947,799 + ABZR87_RS04530 0.39 +0.5
947,799 + ABZR87_RS04530 0.39 -0.2
947,800 - ABZR87_RS04530 0.39 -0.1
947,800 - ABZR87_RS04530 0.39 +0.9
947,800 - ABZR87_RS04530 0.39 -0.7
947,800 - ABZR87_RS04530 0.39 -0.4
947,800 - ABZR87_RS04530 0.39 +0.1
947,800 - ABZR87_RS04530 0.39 -0.4
947,800 - ABZR87_RS04530 0.39 +0.1
947,800 - ABZR87_RS04530 0.39 -2.0
947,820 + ABZR87_RS04530 0.42 +0.5
947,820 + ABZR87_RS04530 0.42 -0.1
947,821 - ABZR87_RS04530 0.42 -0.3
947,821 - ABZR87_RS04530 0.42 -0.4
948,087 + ABZR87_RS04530 0.75 -0.9
948,088 - ABZR87_RS04530 0.75 -0.7
948,154 - ABZR87_RS04530 0.83 -0.6
948,222 + -0.8
948,222 + -0.5
948,223 - +0.1
948,223 - -1.3
948,288 + -0.2
948,289 - +0.4
948,301 + +0.0
948,301 + -0.5
948,302 - -0.5
948,313 + +0.1
948,313 + +1.4
948,314 - +1.2
948,314 - -1.0

Or see this region's nucleotide sequence