Experiment: rhizosphere sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03325 and ABZR87_RS03330 are separated by 30 nucleotides ABZR87_RS03330 and ABZR87_RS03335 are separated by 102 nucleotides ABZR87_RS03335 and ABZR87_RS03340 are separated by 12 nucleotides ABZR87_RS03340 and ABZR87_RS03345 are separated by 125 nucleotides
ABZR87_RS03325: ABZR87_RS03325 - GNAT family N-acetyltransferase, at 702,022 to 702,717
_RS03325
ABZR87_RS03330: ABZR87_RS03330 - MarR family transcriptional regulator, at 702,748 to 703,215
_RS03330
ABZR87_RS03335: ABZR87_RS03335 - hypothetical protein, at 703,318 to 703,671
_RS03335
ABZR87_RS03340: ABZR87_RS03340 - VOC family protein, at 703,684 to 704,076
_RS03340
ABZR87_RS03345: ABZR87_RS03345 - cupin domain-containing protein, at 704,202 to 704,693
_RS03345
Position (kb) 703
704 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 702.326 kb on - strand, within ABZR87_RS03325 at 702.326 kb on - strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.464 kb on - strand, within ABZR87_RS03325 at 702.464 kb on - strand, within ABZR87_RS03325 at 702.464 kb on - strand, within ABZR87_RS03325 at 702.464 kb on - strand, within ABZR87_RS03325 at 702.464 kb on - strand, within ABZR87_RS03325 at 702.532 kb on + strand, within ABZR87_RS03325 at 702.533 kb on - strand, within ABZR87_RS03325 at 702.533 kb on - strand, within ABZR87_RS03325 at 702.533 kb on - strand, within ABZR87_RS03325 at 702.533 kb on - strand, within ABZR87_RS03325 at 702.533 kb on - strand, within ABZR87_RS03325 at 702.538 kb on + strand, within ABZR87_RS03325 at 702.556 kb on + strand, within ABZR87_RS03325 at 702.556 kb on + strand, within ABZR87_RS03325 at 702.631 kb on + strand, within ABZR87_RS03325 at 702.631 kb on + strand, within ABZR87_RS03325 at 702.631 kb on + strand, within ABZR87_RS03325 at 702.631 kb on + strand, within ABZR87_RS03325 at 702.631 kb on + strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.715 kb on + strand at 702.716 kb on - strand at 702.716 kb on - strand at 702.716 kb on - strand at 702.716 kb on - strand at 702.716 kb on - strand at 702.716 kb on - strand at 702.762 kb on + strand at 702.762 kb on + strand at 702.762 kb on + strand at 702.763 kb on - strand at 702.763 kb on - strand at 702.763 kb on - strand at 702.763 kb on - strand at 702.763 kb on - strand at 702.763 kb on - strand at 702.763 kb on - strand at 702.976 kb on + strand, within ABZR87_RS03330 at 702.976 kb on + strand, within ABZR87_RS03330 at 702.977 kb on - strand, within ABZR87_RS03330 at 702.977 kb on - strand, within ABZR87_RS03330 at 702.977 kb on - strand, within ABZR87_RS03330 at 702.977 kb on - strand, within ABZR87_RS03330 at 702.977 kb on - strand, within ABZR87_RS03330 at 703.038 kb on + strand, within ABZR87_RS03330 at 703.039 kb on - strand, within ABZR87_RS03330 at 703.060 kb on - strand, within ABZR87_RS03330 at 703.224 kb on - strand at 703.228 kb on + strand at 703.258 kb on - strand at 703.568 kb on + strand, within ABZR87_RS03335 at 703.568 kb on + strand, within ABZR87_RS03335 at 703.569 kb on - strand, within ABZR87_RS03335 at 703.569 kb on - strand, within ABZR87_RS03335 at 703.569 kb on - strand, within ABZR87_RS03335 at 703.660 kb on + strand at 703.660 kb on + strand at 703.660 kb on + strand at 703.660 kb on + strand at 703.661 kb on - strand at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.747 kb on - strand, within ABZR87_RS03340 at 703.747 kb on - strand, within ABZR87_RS03340 at 703.747 kb on - strand, within ABZR87_RS03340 at 704.008 kb on + strand, within ABZR87_RS03340 at 704.008 kb on + strand, within ABZR87_RS03340 at 704.008 kb on + strand, within ABZR87_RS03340 at 704.009 kb on - strand, within ABZR87_RS03340 at 704.115 kb on + strand at 704.115 kb on + strand at 704.115 kb on + strand at 704.115 kb on + strand at 704.116 kb on - strand at 704.116 kb on - strand at 704.116 kb on - strand at 704.382 kb on + strand, within ABZR87_RS03345 at 704.382 kb on + strand, within ABZR87_RS03345 at 704.383 kb on - strand, within ABZR87_RS03345 at 704.383 kb on - strand, within ABZR87_RS03345 at 704.409 kb on + strand, within ABZR87_RS03345 at 704.409 kb on + strand, within ABZR87_RS03345 at 704.409 kb on + strand, within ABZR87_RS03345 at 704.409 kb on + strand, within ABZR87_RS03345 at 704.409 kb on + strand, within ABZR87_RS03345 at 704.409 kb on + strand, within ABZR87_RS03345 at 704.409 kb on + strand, within ABZR87_RS03345 at 704.409 kb on + strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.439 kb on + strand, within ABZR87_RS03345 at 704.440 kb on - strand, within ABZR87_RS03345 at 704.440 kb on - strand, within ABZR87_RS03345 at 704.502 kb on + strand, within ABZR87_RS03345 at 704.502 kb on + strand, within ABZR87_RS03345 at 704.502 kb on + strand, within ABZR87_RS03345 at 704.502 kb on + strand, within ABZR87_RS03345 at 704.502 kb on + strand, within ABZR87_RS03345 at 704.502 kb on + strand, within ABZR87_RS03345 at 704.502 kb on + strand, within ABZR87_RS03345 at 704.502 kb on + strand, within ABZR87_RS03345 at 704.502 kb on + strand, within ABZR87_RS03345 at 704.503 kb on - strand, within ABZR87_RS03345 at 704.503 kb on - strand, within ABZR87_RS03345 at 704.503 kb on - strand, within ABZR87_RS03345 at 704.503 kb on - strand, within ABZR87_RS03345 at 704.503 kb on - strand, within ABZR87_RS03345 at 704.503 kb on - strand, within ABZR87_RS03345 at 704.592 kb on + strand, within ABZR87_RS03345 at 704.592 kb on + strand, within ABZR87_RS03345 at 704.592 kb on + strand, within ABZR87_RS03345 at 704.592 kb on + strand, within ABZR87_RS03345 at 704.592 kb on + strand, within ABZR87_RS03345 at 704.592 kb on + strand, within ABZR87_RS03345 at 704.593 kb on - strand, within ABZR87_RS03345 at 704.593 kb on - strand, within ABZR87_RS03345 at 704.593 kb on - strand, within ABZR87_RS03345 at 704.655 kb on + strand at 704.655 kb on + strand at 704.655 kb on + strand at 704.655 kb on + strand at 704.656 kb on - strand at 704.656 kb on - strand at 704.656 kb on - strand at 704.656 kb on - strand at 704.656 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 6; outgrowth in LB remove 702,326 - ABZR87_RS03325 0.44 -0.5 702,326 - ABZR87_RS03325 0.44 +0.0 702,463 + ABZR87_RS03325 0.63 +0.2 702,463 + ABZR87_RS03325 0.63 +0.5 702,463 + ABZR87_RS03325 0.63 +0.4 702,463 + ABZR87_RS03325 0.63 -1.5 702,463 + ABZR87_RS03325 0.63 +0.5 702,463 + ABZR87_RS03325 0.63 -0.2 702,463 + ABZR87_RS03325 0.63 -2.8 702,463 + ABZR87_RS03325 0.63 -2.0 702,464 - ABZR87_RS03325 0.64 +0.1 702,464 - ABZR87_RS03325 0.64 -0.3 702,464 - ABZR87_RS03325 0.64 +0.2 702,464 - ABZR87_RS03325 0.64 +0.3 702,464 - ABZR87_RS03325 0.64 +1.0 702,532 + ABZR87_RS03325 0.73 +0.2 702,533 - ABZR87_RS03325 0.73 +0.2 702,533 - ABZR87_RS03325 0.73 -1.0 702,533 - ABZR87_RS03325 0.73 +0.3 702,533 - ABZR87_RS03325 0.73 +0.1 702,533 - ABZR87_RS03325 0.73 -1.0 702,538 + ABZR87_RS03325 0.74 -0.3 702,556 + ABZR87_RS03325 0.77 -0.3 702,556 + ABZR87_RS03325 0.77 -0.6 702,631 + ABZR87_RS03325 0.88 +0.4 702,631 + ABZR87_RS03325 0.88 -0.6 702,631 + ABZR87_RS03325 0.88 +1.1 702,631 + ABZR87_RS03325 0.88 +0.6 702,631 + ABZR87_RS03325 0.88 -1.3 702,632 - ABZR87_RS03325 0.88 -0.8 702,632 - ABZR87_RS03325 0.88 +0.7 702,632 - ABZR87_RS03325 0.88 -0.1 702,632 - ABZR87_RS03325 0.88 -0.1 702,632 - ABZR87_RS03325 0.88 +0.8 702,632 - ABZR87_RS03325 0.88 +0.3 702,632 - ABZR87_RS03325 0.88 +0.4 702,632 - ABZR87_RS03325 0.88 +0.9 702,632 - ABZR87_RS03325 0.88 +0.4 702,632 - ABZR87_RS03325 0.88 +1.0 702,632 - ABZR87_RS03325 0.88 +0.3 702,632 - ABZR87_RS03325 0.88 -0.1 702,715 + -0.0 702,716 - +0.8 702,716 - +2.3 702,716 - -0.2 702,716 - -0.9 702,716 - -0.1 702,716 - -1.2 702,762 + +0.5 702,762 + -0.6 702,762 + -0.8 702,763 - +1.5 702,763 - -2.2 702,763 - +0.7 702,763 - +0.6 702,763 - -0.4 702,763 - +0.8 702,763 - +0.4 702,976 + ABZR87_RS03330 0.49 -0.9 702,976 + ABZR87_RS03330 0.49 +0.4 702,977 - ABZR87_RS03330 0.49 -1.4 702,977 - ABZR87_RS03330 0.49 -0.9 702,977 - ABZR87_RS03330 0.49 -1.7 702,977 - ABZR87_RS03330 0.49 -0.4 702,977 - ABZR87_RS03330 0.49 -1.1 703,038 + ABZR87_RS03330 0.62 -0.0 703,039 - ABZR87_RS03330 0.62 +0.9 703,060 - ABZR87_RS03330 0.67 -2.1 703,224 - -0.7 703,228 + +2.9 703,258 - -0.4 703,568 + ABZR87_RS03335 0.71 -0.5 703,568 + ABZR87_RS03335 0.71 +0.8 703,569 - ABZR87_RS03335 0.71 +1.9 703,569 - ABZR87_RS03335 0.71 +0.2 703,569 - ABZR87_RS03335 0.71 -0.2 703,660 + -0.2 703,660 + +0.7 703,660 + -0.4 703,660 + -1.8 703,661 - +0.6 703,744 + ABZR87_RS03340 0.15 +0.4 703,744 + ABZR87_RS03340 0.15 -1.1 703,744 + ABZR87_RS03340 0.15 -0.2 703,744 + ABZR87_RS03340 0.15 -0.6 703,744 + ABZR87_RS03340 0.15 -1.1 703,744 + ABZR87_RS03340 0.15 -0.1 703,744 + ABZR87_RS03340 0.15 -1.1 703,744 + ABZR87_RS03340 0.15 -0.6 703,744 + ABZR87_RS03340 0.15 +0.2 703,744 + ABZR87_RS03340 0.15 -0.2 703,744 + ABZR87_RS03340 0.15 -0.2 703,744 + ABZR87_RS03340 0.15 -0.1 703,744 + ABZR87_RS03340 0.15 -0.6 703,744 + ABZR87_RS03340 0.15 -0.6 703,744 + ABZR87_RS03340 0.15 -1.5 703,745 - ABZR87_RS03340 0.16 -0.4 703,745 - ABZR87_RS03340 0.16 -1.4 703,745 - ABZR87_RS03340 0.16 +0.3 703,745 - ABZR87_RS03340 0.16 -0.1 703,745 - ABZR87_RS03340 0.16 +0.6 703,745 - ABZR87_RS03340 0.16 -0.7 703,745 - ABZR87_RS03340 0.16 -1.7 703,745 - ABZR87_RS03340 0.16 -0.0 703,745 - ABZR87_RS03340 0.16 +1.1 703,745 - ABZR87_RS03340 0.16 -1.2 703,745 - ABZR87_RS03340 0.16 +0.2 703,745 - ABZR87_RS03340 0.16 +0.3 703,745 - ABZR87_RS03340 0.16 +0.6 703,747 - ABZR87_RS03340 0.16 -0.4 703,747 - ABZR87_RS03340 0.16 +0.4 703,747 - ABZR87_RS03340 0.16 -0.1 704,008 + ABZR87_RS03340 0.82 +0.1 704,008 + ABZR87_RS03340 0.82 +0.3 704,008 + ABZR87_RS03340 0.82 -1.1 704,009 - ABZR87_RS03340 0.83 -0.3 704,115 + -0.4 704,115 + -0.5 704,115 + -2.1 704,115 + +0.7 704,116 - +0.4 704,116 - +0.7 704,116 - -0.1 704,382 + ABZR87_RS03345 0.37 -0.1 704,382 + ABZR87_RS03345 0.37 -0.5 704,383 - ABZR87_RS03345 0.37 -1.2 704,383 - ABZR87_RS03345 0.37 +0.6 704,409 + ABZR87_RS03345 0.42 +0.4 704,409 + ABZR87_RS03345 0.42 +0.4 704,409 + ABZR87_RS03345 0.42 +0.1 704,409 + ABZR87_RS03345 0.42 +1.2 704,409 + ABZR87_RS03345 0.42 +0.9 704,409 + ABZR87_RS03345 0.42 -0.1 704,409 + ABZR87_RS03345 0.42 +0.2 704,409 + ABZR87_RS03345 0.42 -0.2 704,410 - ABZR87_RS03345 0.42 -0.1 704,410 - ABZR87_RS03345 0.42 -0.5 704,410 - ABZR87_RS03345 0.42 -0.6 704,410 - ABZR87_RS03345 0.42 -0.0 704,410 - ABZR87_RS03345 0.42 -0.0 704,410 - ABZR87_RS03345 0.42 +0.4 704,410 - ABZR87_RS03345 0.42 +0.6 704,410 - ABZR87_RS03345 0.42 +1.2 704,410 - ABZR87_RS03345 0.42 +0.8 704,410 - ABZR87_RS03345 0.42 +0.8 704,410 - ABZR87_RS03345 0.42 +0.4 704,410 - ABZR87_RS03345 0.42 -2.6 704,410 - ABZR87_RS03345 0.42 +0.2 704,439 + ABZR87_RS03345 0.48 -0.7 704,440 - ABZR87_RS03345 0.48 -0.3 704,440 - ABZR87_RS03345 0.48 -0.3 704,502 + ABZR87_RS03345 0.61 -0.9 704,502 + ABZR87_RS03345 0.61 -0.1 704,502 + ABZR87_RS03345 0.61 +0.1 704,502 + ABZR87_RS03345 0.61 -0.6 704,502 + ABZR87_RS03345 0.61 -0.5 704,502 + ABZR87_RS03345 0.61 -1.5 704,502 + ABZR87_RS03345 0.61 +1.4 704,502 + ABZR87_RS03345 0.61 -1.7 704,502 + ABZR87_RS03345 0.61 -0.2 704,503 - ABZR87_RS03345 0.61 +1.6 704,503 - ABZR87_RS03345 0.61 +0.3 704,503 - ABZR87_RS03345 0.61 +1.0 704,503 - ABZR87_RS03345 0.61 +0.0 704,503 - ABZR87_RS03345 0.61 +0.6 704,503 - ABZR87_RS03345 0.61 +0.9 704,592 + ABZR87_RS03345 0.79 +0.3 704,592 + ABZR87_RS03345 0.79 +3.3 704,592 + ABZR87_RS03345 0.79 +2.2 704,592 + ABZR87_RS03345 0.79 +0.5 704,592 + ABZR87_RS03345 0.79 +0.4 704,592 + ABZR87_RS03345 0.79 -0.4 704,593 - ABZR87_RS03345 0.79 -1.2 704,593 - ABZR87_RS03345 0.79 -1.2 704,593 - ABZR87_RS03345 0.79 -0.3 704,655 + +1.3 704,655 + +1.7 704,655 + -0.6 704,655 + -1.1 704,656 - -0.0 704,656 - -0.7 704,656 - +0.6 704,656 - +1.3 704,656 - -0.7
Or see this region's nucleotide sequence