Experiment: rhizosphere sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01435 and ABZR87_RS01440 are separated by 86 nucleotides ABZR87_RS01440 and ABZR87_RS01445 are separated by 115 nucleotides
ABZR87_RS01435: ABZR87_RS01435 - type I glyceraldehyde-3-phosphate dehydrogenase, at 301,190 to 302,188
_RS01435
ABZR87_RS01440: ABZR87_RS01440 - transketolase, at 302,275 to 304,290
_RS01440
ABZR87_RS01445: ABZR87_RS01445 - galactonate dehydratase, at 304,406 to 305,554
_RS01445
Position (kb) 302
303
304
305 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 302.230 kb on - strand at 302.276 kb on + strand at 302.277 kb on - strand at 302.277 kb on - strand at 302.277 kb on - strand at 304.381 kb on + strand at 304.381 kb on + strand at 304.382 kb on - strand at 304.382 kb on - strand at 304.382 kb on - strand at 304.407 kb on + strand at 304.407 kb on + strand at 304.408 kb on - strand at 304.408 kb on - strand at 304.539 kb on + strand, within ABZR87_RS01445 at 304.539 kb on + strand, within ABZR87_RS01445 at 304.539 kb on + strand, within ABZR87_RS01445 at 304.539 kb on + strand, within ABZR87_RS01445 at 304.539 kb on + strand, within ABZR87_RS01445 at 304.539 kb on + strand, within ABZR87_RS01445 at 304.540 kb on - strand, within ABZR87_RS01445 at 304.540 kb on - strand, within ABZR87_RS01445 at 304.540 kb on - strand, within ABZR87_RS01445 at 304.540 kb on - strand, within ABZR87_RS01445 at 304.540 kb on - strand, within ABZR87_RS01445 at 304.540 kb on - strand, within ABZR87_RS01445 at 304.540 kb on - strand, within ABZR87_RS01445 at 304.578 kb on + strand, within ABZR87_RS01445 at 304.578 kb on + strand, within ABZR87_RS01445 at 304.578 kb on + strand, within ABZR87_RS01445 at 304.578 kb on + strand, within ABZR87_RS01445 at 304.579 kb on - strand, within ABZR87_RS01445 at 304.579 kb on - strand, within ABZR87_RS01445 at 304.579 kb on - strand, within ABZR87_RS01445 at 304.579 kb on - strand, within ABZR87_RS01445 at 304.579 kb on - strand, within ABZR87_RS01445 at 304.605 kb on + strand, within ABZR87_RS01445 at 304.605 kb on + strand, within ABZR87_RS01445 at 304.606 kb on - strand, within ABZR87_RS01445 at 304.606 kb on - strand, within ABZR87_RS01445 at 304.606 kb on - strand, within ABZR87_RS01445 at 304.606 kb on - strand, within ABZR87_RS01445 at 304.722 kb on + strand, within ABZR87_RS01445 at 304.723 kb on - strand, within ABZR87_RS01445 at 304.723 kb on - strand, within ABZR87_RS01445 at 304.896 kb on + strand, within ABZR87_RS01445 at 304.896 kb on + strand, within ABZR87_RS01445 at 304.896 kb on + strand, within ABZR87_RS01445 at 304.896 kb on + strand, within ABZR87_RS01445 at 304.897 kb on - strand, within ABZR87_RS01445 at 304.897 kb on - strand, within ABZR87_RS01445 at 304.934 kb on - strand, within ABZR87_RS01445 at 305.205 kb on + strand, within ABZR87_RS01445 at 305.205 kb on + strand, within ABZR87_RS01445 at 305.205 kb on + strand, within ABZR87_RS01445 at 305.205 kb on + strand, within ABZR87_RS01445 at 305.206 kb on - strand, within ABZR87_RS01445 at 305.206 kb on - strand, within ABZR87_RS01445 at 305.206 kb on - strand, within ABZR87_RS01445 at 305.248 kb on - strand, within ABZR87_RS01445
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 6; outgrowth in LB remove 302,230 - +1.9 302,276 + +2.9 302,277 - +0.8 302,277 - -0.3 302,277 - -0.2 304,381 + -0.3 304,381 + +0.5 304,382 - -2.1 304,382 - +1.1 304,382 - +0.2 304,407 + +1.2 304,407 + +0.9 304,408 - -0.0 304,408 - +0.6 304,539 + ABZR87_RS01445 0.12 -0.3 304,539 + ABZR87_RS01445 0.12 +0.6 304,539 + ABZR87_RS01445 0.12 +0.4 304,539 + ABZR87_RS01445 0.12 -0.7 304,539 + ABZR87_RS01445 0.12 -0.0 304,539 + ABZR87_RS01445 0.12 -0.1 304,540 - ABZR87_RS01445 0.12 +0.2 304,540 - ABZR87_RS01445 0.12 -1.7 304,540 - ABZR87_RS01445 0.12 +0.4 304,540 - ABZR87_RS01445 0.12 -0.4 304,540 - ABZR87_RS01445 0.12 +0.5 304,540 - ABZR87_RS01445 0.12 -0.1 304,540 - ABZR87_RS01445 0.12 +0.4 304,578 + ABZR87_RS01445 0.15 -1.1 304,578 + ABZR87_RS01445 0.15 -0.0 304,578 + ABZR87_RS01445 0.15 +0.7 304,578 + ABZR87_RS01445 0.15 +1.4 304,579 - ABZR87_RS01445 0.15 +0.8 304,579 - ABZR87_RS01445 0.15 -1.0 304,579 - ABZR87_RS01445 0.15 -0.7 304,579 - ABZR87_RS01445 0.15 +0.4 304,579 - ABZR87_RS01445 0.15 +0.4 304,605 + ABZR87_RS01445 0.17 +0.1 304,605 + ABZR87_RS01445 0.17 -0.0 304,606 - ABZR87_RS01445 0.17 -0.4 304,606 - ABZR87_RS01445 0.17 +0.4 304,606 - ABZR87_RS01445 0.17 -0.0 304,606 - ABZR87_RS01445 0.17 +0.2 304,722 + ABZR87_RS01445 0.28 +0.4 304,723 - ABZR87_RS01445 0.28 +0.1 304,723 - ABZR87_RS01445 0.28 +2.3 304,896 + ABZR87_RS01445 0.43 +2.0 304,896 + ABZR87_RS01445 0.43 +1.0 304,896 + ABZR87_RS01445 0.43 +1.5 304,896 + ABZR87_RS01445 0.43 -0.8 304,897 - ABZR87_RS01445 0.43 -0.1 304,897 - ABZR87_RS01445 0.43 +0.1 304,934 - ABZR87_RS01445 0.46 +0.5 305,205 + ABZR87_RS01445 0.70 +0.8 305,205 + ABZR87_RS01445 0.70 -0.4 305,205 + ABZR87_RS01445 0.70 +1.1 305,205 + ABZR87_RS01445 0.70 -0.1 305,206 - ABZR87_RS01445 0.70 -0.4 305,206 - ABZR87_RS01445 0.70 +0.7 305,206 - ABZR87_RS01445 0.70 -0.6 305,248 - ABZR87_RS01445 0.73 -0.1
Or see this region's nucleotide sequence