Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01125

Experiment: rhizosphere sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01115 and ABZR87_RS01120 are separated by 78 nucleotidesABZR87_RS01120 and ABZR87_RS01125 are separated by 121 nucleotidesABZR87_RS01125 and ABZR87_RS01130 overlap by 1 nucleotides ABZR87_RS01115: ABZR87_RS01115 - mechanosensitive ion channel family protein, at 231,431 to 232,333 _RS01115 ABZR87_RS01120: ABZR87_RS01120 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 232,412 to 232,969 _RS01120 ABZR87_RS01125: ABZR87_RS01125 - FAD-linked oxidase C-terminal domain-containing protein, at 233,091 to 234,509 _RS01125 ABZR87_RS01130: ABZR87_RS01130 - LysR substrate-binding domain-containing protein, at 234,509 to 235,399 _RS01130 Position (kb) 233 234 235Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 232.149 kb on - strand, within ABZR87_RS01115at 232.166 kb on + strand, within ABZR87_RS01115at 232.166 kb on + strand, within ABZR87_RS01115at 232.166 kb on + strand, within ABZR87_RS01115at 232.167 kb on - strand, within ABZR87_RS01115at 232.167 kb on - strand, within ABZR87_RS01115at 232.167 kb on - strand, within ABZR87_RS01115at 232.178 kb on + strand, within ABZR87_RS01115at 232.179 kb on - strand, within ABZR87_RS01115at 232.179 kb on - strand, within ABZR87_RS01115at 232.179 kb on - strand, within ABZR87_RS01115at 232.369 kb on + strandat 232.370 kb on - strandat 232.370 kb on - strandat 232.370 kb on - strandat 232.413 kb on + strandat 232.414 kb on - strandat 232.518 kb on + strand, within ABZR87_RS01120at 232.518 kb on + strand, within ABZR87_RS01120at 232.519 kb on - strand, within ABZR87_RS01120at 232.519 kb on - strand, within ABZR87_RS01120at 232.519 kb on - strand, within ABZR87_RS01120at 232.674 kb on + strand, within ABZR87_RS01120at 232.674 kb on + strand, within ABZR87_RS01120at 232.674 kb on + strand, within ABZR87_RS01120at 232.728 kb on + strand, within ABZR87_RS01120at 232.729 kb on - strand, within ABZR87_RS01120at 232.834 kb on + strand, within ABZR87_RS01120at 232.835 kb on - strand, within ABZR87_RS01120at 232.983 kb on + strandat 232.983 kb on + strandat 232.983 kb on + strandat 232.984 kb on - strandat 232.984 kb on - strandat 232.984 kb on - strandat 232.984 kb on - strandat 232.989 kb on + strandat 232.989 kb on + strandat 232.990 kb on - strandat 232.990 kb on - strandat 233.013 kb on + strandat 233.042 kb on - strandat 233.484 kb on - strand, within ABZR87_RS01125at 233.589 kb on + strand, within ABZR87_RS01125at 233.688 kb on + strand, within ABZR87_RS01125at 233.688 kb on + strand, within ABZR87_RS01125at 233.688 kb on + strand, within ABZR87_RS01125at 233.760 kb on + strand, within ABZR87_RS01125at 233.760 kb on + strand, within ABZR87_RS01125at 233.760 kb on + strand, within ABZR87_RS01125at 233.761 kb on - strand, within ABZR87_RS01125at 233.761 kb on - strand, within ABZR87_RS01125at 233.910 kb on + strand, within ABZR87_RS01125at 233.910 kb on + strand, within ABZR87_RS01125at 233.910 kb on + strand, within ABZR87_RS01125at 233.911 kb on - strand, within ABZR87_RS01125at 233.911 kb on - strand, within ABZR87_RS01125at 234.020 kb on + strand, within ABZR87_RS01125at 234.020 kb on + strand, within ABZR87_RS01125at 234.020 kb on + strand, within ABZR87_RS01125at 234.020 kb on + strand, within ABZR87_RS01125at 234.021 kb on - strand, within ABZR87_RS01125at 234.021 kb on - strand, within ABZR87_RS01125at 234.093 kb on + strand, within ABZR87_RS01125at 234.093 kb on + strand, within ABZR87_RS01125at 234.093 kb on + strand, within ABZR87_RS01125at 234.094 kb on - strand, within ABZR87_RS01125at 234.094 kb on - strand, within ABZR87_RS01125at 234.507 kb on + strandat 234.507 kb on + strandat 234.507 kb on + strandat 234.507 kb on + strandat 234.508 kb on - strandat 234.508 kb on - strandat 234.722 kb on + strand, within ABZR87_RS01130at 234.723 kb on - strand, within ABZR87_RS01130at 234.723 kb on - strand, within ABZR87_RS01130at 234.872 kb on + strand, within ABZR87_RS01130at 234.872 kb on + strand, within ABZR87_RS01130at 234.873 kb on - strand, within ABZR87_RS01130at 234.873 kb on - strand, within ABZR87_RS01130at 234.969 kb on - strand, within ABZR87_RS01130at 235.316 kb on + strandat 235.316 kb on + strandat 235.316 kb on + strandat 235.316 kb on + strandat 235.316 kb on + strandat 235.316 kb on + strandat 235.316 kb on + strandat 235.316 kb on + strandat 235.317 kb on - strandat 235.317 kb on - strandat 235.317 kb on - strandat 235.317 kb on - strandat 235.317 kb on - strandat 235.319 kb on + strandat 235.319 kb on + strandat 235.319 kb on + strandat 235.319 kb on + strandat 235.319 kb on + strandat 235.320 kb on - strandat 235.320 kb on - strandat 235.320 kb on - strandat 235.320 kb on - strandat 235.320 kb on - strandat 235.320 kb on - strandat 235.397 kb on + strandat 235.398 kb on - strandat 235.398 kb on - strandat 235.398 kb on - strandat 235.473 kb on - strandat 235.473 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 6; outgrowth in LB
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232,149 - ABZR87_RS01115 0.80 -0.1
232,166 + ABZR87_RS01115 0.81 +0.1
232,166 + ABZR87_RS01115 0.81 -0.1
232,166 + ABZR87_RS01115 0.81 +0.2
232,167 - ABZR87_RS01115 0.82 -0.5
232,167 - ABZR87_RS01115 0.82 -0.0
232,167 - ABZR87_RS01115 0.82 -1.5
232,178 + ABZR87_RS01115 0.83 -0.5
232,179 - ABZR87_RS01115 0.83 +0.1
232,179 - ABZR87_RS01115 0.83 +0.3
232,179 - ABZR87_RS01115 0.83 +0.1
232,369 + +0.1
232,370 - -0.2
232,370 - -0.7
232,370 - -0.6
232,413 + -0.2
232,414 - +0.0
232,518 + ABZR87_RS01120 0.19 +0.3
232,518 + ABZR87_RS01120 0.19 -0.0
232,519 - ABZR87_RS01120 0.19 -1.1
232,519 - ABZR87_RS01120 0.19 -0.4
232,519 - ABZR87_RS01120 0.19 -1.1
232,674 + ABZR87_RS01120 0.47 +0.5
232,674 + ABZR87_RS01120 0.47 -0.7
232,674 + ABZR87_RS01120 0.47 +0.4
232,728 + ABZR87_RS01120 0.57 -0.6
232,729 - ABZR87_RS01120 0.57 +0.3
232,834 + ABZR87_RS01120 0.76 +0.1
232,835 - ABZR87_RS01120 0.76 -1.1
232,983 + +1.3
232,983 + -0.1
232,983 + +0.6
232,984 - -0.7
232,984 - -0.5
232,984 - +0.0
232,984 - +1.1
232,989 + -0.7
232,989 + -0.9
232,990 - -0.4
232,990 - +0.6
233,013 + +0.3
233,042 - -1.9
233,484 - ABZR87_RS01125 0.28 -0.2
233,589 + ABZR87_RS01125 0.35 +1.5
233,688 + ABZR87_RS01125 0.42 -1.1
233,688 + ABZR87_RS01125 0.42 +0.9
233,688 + ABZR87_RS01125 0.42 +1.2
233,760 + ABZR87_RS01125 0.47 -0.3
233,760 + ABZR87_RS01125 0.47 -3.1
233,760 + ABZR87_RS01125 0.47 +0.9
233,761 - ABZR87_RS01125 0.47 +0.4
233,761 - ABZR87_RS01125 0.47 -0.3
233,910 + ABZR87_RS01125 0.58 -0.0
233,910 + ABZR87_RS01125 0.58 +1.0
233,910 + ABZR87_RS01125 0.58 +0.7
233,911 - ABZR87_RS01125 0.58 -0.1
233,911 - ABZR87_RS01125 0.58 -1.0
234,020 + ABZR87_RS01125 0.65 -0.5
234,020 + ABZR87_RS01125 0.65 -0.3
234,020 + ABZR87_RS01125 0.65 +0.5
234,020 + ABZR87_RS01125 0.65 -0.3
234,021 - ABZR87_RS01125 0.66 +0.3
234,021 - ABZR87_RS01125 0.66 -0.2
234,093 + ABZR87_RS01125 0.71 +0.7
234,093 + ABZR87_RS01125 0.71 +0.6
234,093 + ABZR87_RS01125 0.71 -0.9
234,094 - ABZR87_RS01125 0.71 -0.3
234,094 - ABZR87_RS01125 0.71 +0.6
234,507 + +0.5
234,507 + -0.0
234,507 + +0.3
234,507 + +0.0
234,508 - +0.5
234,508 - -1.0
234,722 + ABZR87_RS01130 0.24 -0.9
234,723 - ABZR87_RS01130 0.24 +1.0
234,723 - ABZR87_RS01130 0.24 -0.1
234,872 + ABZR87_RS01130 0.41 -0.3
234,872 + ABZR87_RS01130 0.41 -0.4
234,873 - ABZR87_RS01130 0.41 +0.1
234,873 - ABZR87_RS01130 0.41 +1.9
234,969 - ABZR87_RS01130 0.52 -0.2
235,316 + -1.0
235,316 + +0.8
235,316 + +0.9
235,316 + -0.4
235,316 + -0.2
235,316 + -0.7
235,316 + +0.6
235,316 + +1.7
235,317 - +1.8
235,317 - +0.2
235,317 - -2.6
235,317 - +0.0
235,317 - +1.0
235,319 + +1.4
235,319 + +0.2
235,319 + -1.0
235,319 + +1.4
235,319 + +0.8
235,320 - +0.1
235,320 - +1.0
235,320 - +1.0
235,320 - -0.6
235,320 - -0.1
235,320 - -0.7
235,397 + +0.7
235,398 - -0.6
235,398 - -1.2
235,398 - +0.2
235,473 - +0.6
235,473 - +0.6

Or see this region's nucleotide sequence