Experiment: rhizosphere sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01080 and ABZR87_RS01085 are separated by 94 nucleotides ABZR87_RS01085 and ABZR87_RS01090 overlap by 4 nucleotides ABZR87_RS01090 and ABZR87_RS01095 are separated by 176 nucleotides
ABZR87_RS01080: ABZR87_RS01080 - S8 family serine peptidase, at 217,347 to 219,401
_RS01080
ABZR87_RS01085: ABZR87_RS01085 - rhombosortase, at 219,496 to 220,116
_RS01085
ABZR87_RS01090: ABZR87_RS01090 - bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase, at 220,113 to 222,956
_RS01090
ABZR87_RS01095: ABZR87_RS01095 - YhdP family protein, at 223,133 to 227,422
_RS01095
Position (kb) 220
221
222
223 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 219.117 kb on + strand, within ABZR87_RS01080 at 219.118 kb on - strand, within ABZR87_RS01080 at 219.118 kb on - strand, within ABZR87_RS01080 at 219.118 kb on - strand, within ABZR87_RS01080 at 219.118 kb on - strand, within ABZR87_RS01080 at 219.153 kb on + strand, within ABZR87_RS01080 at 219.153 kb on + strand, within ABZR87_RS01080 at 219.153 kb on + strand, within ABZR87_RS01080 at 219.154 kb on - strand, within ABZR87_RS01080 at 219.408 kb on - strand at 219.408 kb on - strand at 219.589 kb on + strand, within ABZR87_RS01085 at 219.589 kb on + strand, within ABZR87_RS01085 at 219.589 kb on + strand, within ABZR87_RS01085 at 219.590 kb on - strand, within ABZR87_RS01085 at 220.011 kb on - strand, within ABZR87_RS01085 at 220.011 kb on - strand, within ABZR87_RS01085 at 220.026 kb on - strand, within ABZR87_RS01085 at 220.178 kb on + strand at 220.178 kb on + strand at 220.179 kb on - strand at 220.179 kb on - strand at 220.250 kb on - strand at 220.535 kb on + strand, within ABZR87_RS01090 at 220.742 kb on + strand, within ABZR87_RS01090 at 220.786 kb on + strand, within ABZR87_RS01090 at 220.786 kb on + strand, within ABZR87_RS01090 at 220.787 kb on - strand, within ABZR87_RS01090 at 220.787 kb on - strand, within ABZR87_RS01090 at 220.820 kb on - strand, within ABZR87_RS01090 at 220.850 kb on - strand, within ABZR87_RS01090 at 220.879 kb on + strand, within ABZR87_RS01090 at 220.880 kb on - strand, within ABZR87_RS01090 at 221.212 kb on + strand, within ABZR87_RS01090 at 221.212 kb on + strand, within ABZR87_RS01090 at 221.213 kb on - strand, within ABZR87_RS01090 at 221.213 kb on - strand, within ABZR87_RS01090 at 221.273 kb on - strand, within ABZR87_RS01090 at 221.293 kb on + strand, within ABZR87_RS01090 at 221.293 kb on + strand, within ABZR87_RS01090 at 221.294 kb on - strand, within ABZR87_RS01090 at 221.294 kb on - strand, within ABZR87_RS01090 at 221.437 kb on + strand, within ABZR87_RS01090 at 221.669 kb on - strand, within ABZR87_RS01090 at 221.752 kb on + strand, within ABZR87_RS01090 at 221.753 kb on - strand, within ABZR87_RS01090 at 221.753 kb on - strand, within ABZR87_RS01090 at 221.753 kb on - strand, within ABZR87_RS01090 at 221.753 kb on - strand, within ABZR87_RS01090 at 221.789 kb on - strand, within ABZR87_RS01090 at 221.871 kb on + strand, within ABZR87_RS01090 at 221.871 kb on + strand, within ABZR87_RS01090 at 221.872 kb on - strand, within ABZR87_RS01090 at 221.872 kb on - strand, within ABZR87_RS01090 at 221.872 kb on - strand, within ABZR87_RS01090 at 222.094 kb on + strand, within ABZR87_RS01090 at 222.095 kb on - strand, within ABZR87_RS01090 at 222.095 kb on - strand, within ABZR87_RS01090 at 222.154 kb on + strand, within ABZR87_RS01090 at 222.154 kb on + strand, within ABZR87_RS01090 at 222.199 kb on + strand, within ABZR87_RS01090 at 222.232 kb on + strand, within ABZR87_RS01090 at 222.232 kb on + strand, within ABZR87_RS01090 at 222.233 kb on - strand, within ABZR87_RS01090 at 222.233 kb on - strand, within ABZR87_RS01090 at 222.233 kb on - strand, within ABZR87_RS01090 at 222.233 kb on - strand, within ABZR87_RS01090 at 222.233 kb on - strand, within ABZR87_RS01090 at 222.233 kb on - strand, within ABZR87_RS01090 at 222.313 kb on + strand, within ABZR87_RS01090 at 222.313 kb on + strand, within ABZR87_RS01090 at 222.314 kb on - strand, within ABZR87_RS01090 at 222.314 kb on - strand, within ABZR87_RS01090 at 222.314 kb on - strand, within ABZR87_RS01090 at 222.314 kb on - strand, within ABZR87_RS01090 at 222.373 kb on + strand, within ABZR87_RS01090 at 222.373 kb on + strand, within ABZR87_RS01090 at 222.373 kb on + strand, within ABZR87_RS01090 at 222.374 kb on - strand, within ABZR87_RS01090 at 222.427 kb on + strand, within ABZR87_RS01090 at 222.428 kb on - strand, within ABZR87_RS01090 at 222.862 kb on + strand at 223.117 kb on + strand at 223.123 kb on - strand at 223.475 kb on + strand at 223.475 kb on + strand at 223.475 kb on + strand at 223.476 kb on - strand at 223.476 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 6; outgrowth in LB remove 219,117 + ABZR87_RS01080 0.86 +0.0 219,118 - ABZR87_RS01080 0.86 -0.5 219,118 - ABZR87_RS01080 0.86 +0.3 219,118 - ABZR87_RS01080 0.86 -0.0 219,118 - ABZR87_RS01080 0.86 -0.4 219,153 + ABZR87_RS01080 0.88 +1.6 219,153 + ABZR87_RS01080 0.88 -0.5 219,153 + ABZR87_RS01080 0.88 -0.6 219,154 - ABZR87_RS01080 0.88 -0.4 219,408 - -0.8 219,408 - -0.3 219,589 + ABZR87_RS01085 0.15 -1.2 219,589 + ABZR87_RS01085 0.15 -1.3 219,589 + ABZR87_RS01085 0.15 -0.3 219,590 - ABZR87_RS01085 0.15 -0.8 220,011 - ABZR87_RS01085 0.83 -2.1 220,011 - ABZR87_RS01085 0.83 -2.2 220,026 - ABZR87_RS01085 0.85 -2.8 220,178 + -1.5 220,178 + -0.0 220,179 - -1.6 220,179 - -0.3 220,250 - -0.2 220,535 + ABZR87_RS01090 0.15 -1.4 220,742 + ABZR87_RS01090 0.22 -0.1 220,786 + ABZR87_RS01090 0.24 -1.7 220,786 + ABZR87_RS01090 0.24 +0.9 220,787 - ABZR87_RS01090 0.24 -0.3 220,787 - ABZR87_RS01090 0.24 -0.6 220,820 - ABZR87_RS01090 0.25 -1.0 220,850 - ABZR87_RS01090 0.26 -1.7 220,879 + ABZR87_RS01090 0.27 -1.6 220,880 - ABZR87_RS01090 0.27 +0.4 221,212 + ABZR87_RS01090 0.39 +1.7 221,212 + ABZR87_RS01090 0.39 -0.5 221,213 - ABZR87_RS01090 0.39 +1.2 221,213 - ABZR87_RS01090 0.39 -0.2 221,273 - ABZR87_RS01090 0.41 -0.2 221,293 + ABZR87_RS01090 0.41 -1.2 221,293 + ABZR87_RS01090 0.41 -0.0 221,294 - ABZR87_RS01090 0.42 -0.1 221,294 - ABZR87_RS01090 0.42 -0.8 221,437 + ABZR87_RS01090 0.47 -0.9 221,669 - ABZR87_RS01090 0.55 -0.3 221,752 + ABZR87_RS01090 0.58 -1.7 221,753 - ABZR87_RS01090 0.58 -1.5 221,753 - ABZR87_RS01090 0.58 -0.1 221,753 - ABZR87_RS01090 0.58 -2.2 221,753 - ABZR87_RS01090 0.58 +0.8 221,789 - ABZR87_RS01090 0.59 +0.4 221,871 + ABZR87_RS01090 0.62 -1.6 221,871 + ABZR87_RS01090 0.62 -0.1 221,872 - ABZR87_RS01090 0.62 +0.1 221,872 - ABZR87_RS01090 0.62 +0.6 221,872 - ABZR87_RS01090 0.62 -1.1 222,094 + ABZR87_RS01090 0.70 -1.5 222,095 - ABZR87_RS01090 0.70 +0.4 222,095 - ABZR87_RS01090 0.70 +0.1 222,154 + ABZR87_RS01090 0.72 +1.0 222,154 + ABZR87_RS01090 0.72 -1.5 222,199 + ABZR87_RS01090 0.73 -0.1 222,232 + ABZR87_RS01090 0.75 -1.6 222,232 + ABZR87_RS01090 0.75 +0.2 222,233 - ABZR87_RS01090 0.75 -0.8 222,233 - ABZR87_RS01090 0.75 -1.0 222,233 - ABZR87_RS01090 0.75 -1.4 222,233 - ABZR87_RS01090 0.75 -0.8 222,233 - ABZR87_RS01090 0.75 +1.6 222,233 - ABZR87_RS01090 0.75 -0.7 222,313 + ABZR87_RS01090 0.77 -0.9 222,313 + ABZR87_RS01090 0.77 -1.3 222,314 - ABZR87_RS01090 0.77 -1.3 222,314 - ABZR87_RS01090 0.77 -1.3 222,314 - ABZR87_RS01090 0.77 -0.6 222,314 - ABZR87_RS01090 0.77 -1.5 222,373 + ABZR87_RS01090 0.79 -0.4 222,373 + ABZR87_RS01090 0.79 -2.1 222,373 + ABZR87_RS01090 0.79 -1.3 222,374 - ABZR87_RS01090 0.80 -1.9 222,427 + ABZR87_RS01090 0.81 -1.3 222,428 - ABZR87_RS01090 0.81 +1.0 222,862 + -0.3 223,117 + +0.4 223,123 - -1.5 223,475 + +0.8 223,475 + -0.1 223,475 + +0.9 223,476 - +0.2 223,476 - +1.8
Or see this region's nucleotide sequence