Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01020

Experiment: rhizosphere sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01015 and ABZR87_RS01020 overlap by 8 nucleotidesABZR87_RS01020 and ABZR87_RS01025 are separated by 2 nucleotides ABZR87_RS01015: ABZR87_RS01015 - imidazolonepropionase, at 201,609 to 202,844 _RS01015 ABZR87_RS01020: ABZR87_RS01020 - formimidoylglutamase, at 202,837 to 203,814 _RS01020 ABZR87_RS01025: ABZR87_RS01025 - histidine ammonia-lyase, at 203,817 to 205,373 _RS01025 Position (kb) 202 203 204Strain fitness (log2 ratio) -2 -1 0 1 2at 201.867 kb on - strand, within ABZR87_RS01015at 201.867 kb on - strand, within ABZR87_RS01015at 201.955 kb on + strand, within ABZR87_RS01015at 201.956 kb on - strand, within ABZR87_RS01015at 201.956 kb on - strand, within ABZR87_RS01015at 201.956 kb on - strand, within ABZR87_RS01015at 201.956 kb on - strand, within ABZR87_RS01015at 201.956 kb on - strand, within ABZR87_RS01015at 202.257 kb on + strand, within ABZR87_RS01015at 202.261 kb on + strand, within ABZR87_RS01015at 202.261 kb on + strand, within ABZR87_RS01015at 202.261 kb on + strand, within ABZR87_RS01015at 202.261 kb on + strand, within ABZR87_RS01015at 202.261 kb on + strand, within ABZR87_RS01015at 202.261 kb on + strand, within ABZR87_RS01015at 202.261 kb on + strand, within ABZR87_RS01015at 202.261 kb on + strand, within ABZR87_RS01015at 202.261 kb on + strand, within ABZR87_RS01015at 202.261 kb on + strand, within ABZR87_RS01015at 202.262 kb on - strand, within ABZR87_RS01015at 202.262 kb on - strand, within ABZR87_RS01015at 202.549 kb on + strand, within ABZR87_RS01015at 202.549 kb on + strand, within ABZR87_RS01015at 202.549 kb on + strand, within ABZR87_RS01015at 202.549 kb on + strand, within ABZR87_RS01015at 202.601 kb on - strand, within ABZR87_RS01015at 203.090 kb on + strand, within ABZR87_RS01020at 203.091 kb on - strand, within ABZR87_RS01020at 203.228 kb on + strand, within ABZR87_RS01020at 203.228 kb on + strand, within ABZR87_RS01020at 203.228 kb on + strand, within ABZR87_RS01020at 203.229 kb on - strand, within ABZR87_RS01020at 203.229 kb on - strand, within ABZR87_RS01020at 203.229 kb on - strand, within ABZR87_RS01020at 203.252 kb on + strand, within ABZR87_RS01020at 203.252 kb on + strand, within ABZR87_RS01020at 203.253 kb on - strand, within ABZR87_RS01020at 203.341 kb on + strand, within ABZR87_RS01020at 203.370 kb on + strand, within ABZR87_RS01020at 203.929 kb on + strandat 203.929 kb on + strandat 203.929 kb on + strandat 203.929 kb on + strandat 203.930 kb on - strandat 203.930 kb on - strandat 203.932 kb on + strandat 203.932 kb on + strandat 203.932 kb on + strandat 204.385 kb on - strand, within ABZR87_RS01025at 204.403 kb on + strand, within ABZR87_RS01025at 204.403 kb on + strand, within ABZR87_RS01025at 204.404 kb on - strand, within ABZR87_RS01025at 204.512 kb on + strand, within ABZR87_RS01025at 204.512 kb on + strand, within ABZR87_RS01025at 204.513 kb on - strand, within ABZR87_RS01025at 204.513 kb on - strand, within ABZR87_RS01025at 204.514 kb on + strand, within ABZR87_RS01025at 204.514 kb on + strand, within ABZR87_RS01025at 204.514 kb on + strand, within ABZR87_RS01025at 204.515 kb on - strand, within ABZR87_RS01025at 204.515 kb on - strand, within ABZR87_RS01025at 204.586 kb on + strand, within ABZR87_RS01025

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 6; outgrowth in LB
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201,867 - ABZR87_RS01015 0.21 +0.3
201,867 - ABZR87_RS01015 0.21 -0.3
201,955 + ABZR87_RS01015 0.28 +0.1
201,956 - ABZR87_RS01015 0.28 +0.2
201,956 - ABZR87_RS01015 0.28 -0.4
201,956 - ABZR87_RS01015 0.28 +0.4
201,956 - ABZR87_RS01015 0.28 -0.3
201,956 - ABZR87_RS01015 0.28 -0.2
202,257 + ABZR87_RS01015 0.52 +0.7
202,261 + ABZR87_RS01015 0.53 +0.3
202,261 + ABZR87_RS01015 0.53 +0.1
202,261 + ABZR87_RS01015 0.53 -0.3
202,261 + ABZR87_RS01015 0.53 -0.9
202,261 + ABZR87_RS01015 0.53 +0.4
202,261 + ABZR87_RS01015 0.53 -1.2
202,261 + ABZR87_RS01015 0.53 -0.6
202,261 + ABZR87_RS01015 0.53 +0.0
202,261 + ABZR87_RS01015 0.53 -0.2
202,261 + ABZR87_RS01015 0.53 +0.1
202,262 - ABZR87_RS01015 0.53 -0.3
202,262 - ABZR87_RS01015 0.53 +0.0
202,549 + ABZR87_RS01015 0.76 +0.4
202,549 + ABZR87_RS01015 0.76 -0.9
202,549 + ABZR87_RS01015 0.76 -0.1
202,549 + ABZR87_RS01015 0.76 -0.8
202,601 - ABZR87_RS01015 0.80 +0.3
203,090 + ABZR87_RS01020 0.26 +0.1
203,091 - ABZR87_RS01020 0.26 +0.5
203,228 + ABZR87_RS01020 0.40 -0.2
203,228 + ABZR87_RS01020 0.40 -0.6
203,228 + ABZR87_RS01020 0.40 -0.1
203,229 - ABZR87_RS01020 0.40 -0.6
203,229 - ABZR87_RS01020 0.40 +0.1
203,229 - ABZR87_RS01020 0.40 -0.7
203,252 + ABZR87_RS01020 0.42 -1.0
203,252 + ABZR87_RS01020 0.42 +0.8
203,253 - ABZR87_RS01020 0.43 -0.6
203,341 + ABZR87_RS01020 0.52 -1.5
203,370 + ABZR87_RS01020 0.54 -0.0
203,929 + +0.1
203,929 + -0.9
203,929 + +0.1
203,929 + -2.6
203,930 - -0.3
203,930 - -0.6
203,932 + -0.1
203,932 + -0.3
203,932 + -0.1
204,385 - ABZR87_RS01025 0.36 -0.2
204,403 + ABZR87_RS01025 0.38 -1.6
204,403 + ABZR87_RS01025 0.38 -0.0
204,404 - ABZR87_RS01025 0.38 +1.3
204,512 + ABZR87_RS01025 0.45 +1.0
204,512 + ABZR87_RS01025 0.45 +1.9
204,513 - ABZR87_RS01025 0.45 +1.5
204,513 - ABZR87_RS01025 0.45 +0.2
204,514 + ABZR87_RS01025 0.45 +0.1
204,514 + ABZR87_RS01025 0.45 +0.3
204,514 + ABZR87_RS01025 0.45 +0.4
204,515 - ABZR87_RS01025 0.45 -0.2
204,515 - ABZR87_RS01025 0.45 -0.2
204,586 + ABZR87_RS01025 0.49 -0.8

Or see this region's nucleotide sequence