Experiment: rhizosphere sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00920 and ABZR87_RS00925 are separated by 58 nucleotides ABZR87_RS00925 and ABZR87_RS00930 are separated by 51 nucleotides ABZR87_RS00930 and ABZR87_RS00935 are separated by 11 nucleotides
ABZR87_RS00920: ABZR87_RS00920 - AI-2E family transporter, at 183,326 to 184,396
_RS00920
ABZR87_RS00925: ABZR87_RS00925 - DnaA regulatory inactivator Hda, at 184,455 to 185,156
_RS00925
ABZR87_RS00930: ABZR87_RS00930 - HAD family phosphatase, at 185,208 to 185,882
_RS00930
ABZR87_RS00935: ABZR87_RS00935 - polynucleotide adenylyltransferase PcnB, at 185,894 to 187,456
_RS00935
Position (kb) 185
186 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 184.385 kb on + strand at 184.385 kb on + strand at 184.431 kb on + strand at 185.179 kb on + strand at 185.179 kb on + strand at 185.179 kb on + strand at 185.180 kb on - strand at 185.180 kb on - strand at 185.180 kb on - strand at 185.183 kb on + strand at 185.183 kb on + strand at 185.184 kb on - strand at 185.500 kb on - strand, within ABZR87_RS00930 at 185.880 kb on + strand at 185.881 kb on - strand at 185.881 kb on - strand at 185.881 kb on - strand at 185.881 kb on - strand at 186.146 kb on + strand, within ABZR87_RS00935 at 186.308 kb on + strand, within ABZR87_RS00935 at 186.309 kb on - strand, within ABZR87_RS00935 at 186.527 kb on + strand, within ABZR87_RS00935 at 186.527 kb on + strand, within ABZR87_RS00935 at 186.528 kb on - strand, within ABZR87_RS00935 at 186.528 kb on - strand, within ABZR87_RS00935 at 186.530 kb on + strand, within ABZR87_RS00935 at 186.530 kb on + strand, within ABZR87_RS00935 at 186.530 kb on + strand, within ABZR87_RS00935 at 186.530 kb on + strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.560 kb on + strand, within ABZR87_RS00935 at 186.560 kb on + strand, within ABZR87_RS00935 at 186.560 kb on + strand, within ABZR87_RS00935 at 186.561 kb on - strand, within ABZR87_RS00935
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 6; outgrowth in LB remove 184,385 + -0.8 184,385 + +0.7 184,431 + +2.9 185,179 + +1.3 185,179 + +1.0 185,179 + +0.4 185,180 - +0.5 185,180 - -1.0 185,180 - +0.6 185,183 + +0.3 185,183 + -0.5 185,184 - -0.8 185,500 - ABZR87_RS00930 0.43 +2.9 185,880 + +0.0 185,881 - -1.5 185,881 - -0.7 185,881 - -0.8 185,881 - -0.2 186,146 + ABZR87_RS00935 0.16 -0.9 186,308 + ABZR87_RS00935 0.26 +1.5 186,309 - ABZR87_RS00935 0.27 +1.1 186,527 + ABZR87_RS00935 0.40 +1.0 186,527 + ABZR87_RS00935 0.40 -0.4 186,528 - ABZR87_RS00935 0.41 +0.4 186,528 - ABZR87_RS00935 0.41 -0.4 186,530 + ABZR87_RS00935 0.41 +1.1 186,530 + ABZR87_RS00935 0.41 -0.0 186,530 + ABZR87_RS00935 0.41 +0.3 186,530 + ABZR87_RS00935 0.41 +0.9 186,531 - ABZR87_RS00935 0.41 +0.2 186,531 - ABZR87_RS00935 0.41 +0.7 186,531 - ABZR87_RS00935 0.41 -0.5 186,531 - ABZR87_RS00935 0.41 +0.7 186,531 - ABZR87_RS00935 0.41 -0.4 186,531 - ABZR87_RS00935 0.41 -0.8 186,531 - ABZR87_RS00935 0.41 +0.2 186,531 - ABZR87_RS00935 0.41 +0.5 186,531 - ABZR87_RS00935 0.41 -1.8 186,531 - ABZR87_RS00935 0.41 +1.3 186,560 + ABZR87_RS00935 0.43 +0.4 186,560 + ABZR87_RS00935 0.43 +0.2 186,560 + ABZR87_RS00935 0.43 -2.0 186,561 - ABZR87_RS00935 0.43 -0.9
Or see this region's nucleotide sequence