Experiment: rhizosphere sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00490 and ABZR87_RS00495 overlap by 4 nucleotides ABZR87_RS00495 and ABZR87_RS00500 are separated by 35 nucleotides ABZR87_RS00500 and ABZR87_RS00505 are separated by 64 nucleotides
ABZR87_RS00490: ABZR87_RS00490 - MBL fold metallo-hydrolase, at 101,306 to 102,271
_RS00490
ABZR87_RS00495: ABZR87_RS00495 - MliC family protein, at 102,268 to 102,735
_RS00495
ABZR87_RS00500: ABZR87_RS00500 - LysR substrate-binding domain-containing protein, at 102,771 to 103,736
_RS00500
ABZR87_RS00505: ABZR87_RS00505 - LysR family transcriptional regulator, at 103,801 to 104,709
_RS00505
Position (kb) 102
103
104 Strain fitness (log2 ratio) -2
-1
0
1 at 101.987 kb on + strand, within ABZR87_RS00490 at 101.987 kb on + strand, within ABZR87_RS00490 at 101.987 kb on + strand, within ABZR87_RS00490 at 101.988 kb on - strand, within ABZR87_RS00490 at 101.988 kb on - strand, within ABZR87_RS00490 at 101.988 kb on - strand, within ABZR87_RS00490 at 102.185 kb on + strand at 102.185 kb on + strand at 102.185 kb on + strand at 102.185 kb on + strand at 102.186 kb on - strand at 102.270 kb on - strand at 102.306 kb on - strand at 102.377 kb on + strand, within ABZR87_RS00495 at 102.377 kb on + strand, within ABZR87_RS00495 at 102.377 kb on + strand, within ABZR87_RS00495 at 102.377 kb on + strand, within ABZR87_RS00495 at 102.377 kb on + strand, within ABZR87_RS00495 at 102.377 kb on + strand, within ABZR87_RS00495 at 102.377 kb on + strand, within ABZR87_RS00495 at 102.378 kb on - strand, within ABZR87_RS00495 at 102.378 kb on - strand, within ABZR87_RS00495 at 102.378 kb on - strand, within ABZR87_RS00495 at 102.378 kb on - strand, within ABZR87_RS00495 at 102.378 kb on - strand, within ABZR87_RS00495 at 102.378 kb on - strand, within ABZR87_RS00495 at 102.378 kb on - strand, within ABZR87_RS00495 at 102.393 kb on - strand, within ABZR87_RS00495 at 102.485 kb on + strand, within ABZR87_RS00495 at 102.485 kb on + strand, within ABZR87_RS00495 at 102.486 kb on - strand, within ABZR87_RS00495 at 102.486 kb on - strand, within ABZR87_RS00495 at 102.486 kb on - strand, within ABZR87_RS00495 at 102.486 kb on - strand, within ABZR87_RS00495 at 102.521 kb on + strand, within ABZR87_RS00495 at 102.560 kb on + strand, within ABZR87_RS00495 at 102.560 kb on + strand, within ABZR87_RS00495 at 102.561 kb on - strand, within ABZR87_RS00495 at 102.639 kb on + strand, within ABZR87_RS00495 at 103.063 kb on + strand, within ABZR87_RS00500 at 103.063 kb on + strand, within ABZR87_RS00500 at 103.063 kb on + strand, within ABZR87_RS00500 at 103.063 kb on + strand, within ABZR87_RS00500 at 103.063 kb on + strand, within ABZR87_RS00500 at 103.064 kb on - strand, within ABZR87_RS00500 at 103.064 kb on - strand, within ABZR87_RS00500 at 103.064 kb on - strand, within ABZR87_RS00500 at 103.064 kb on - strand, within ABZR87_RS00500 at 103.379 kb on + strand, within ABZR87_RS00500 at 103.522 kb on + strand, within ABZR87_RS00500 at 103.523 kb on - strand, within ABZR87_RS00500 at 103.523 kb on - strand, within ABZR87_RS00500 at 103.936 kb on + strand, within ABZR87_RS00505 at 103.936 kb on + strand, within ABZR87_RS00505 at 103.937 kb on - strand, within ABZR87_RS00505 at 103.976 kb on - strand, within ABZR87_RS00505 at 104.210 kb on + strand, within ABZR87_RS00505 at 104.210 kb on + strand, within ABZR87_RS00505 at 104.210 kb on + strand, within ABZR87_RS00505 at 104.210 kb on + strand, within ABZR87_RS00505 at 104.210 kb on + strand, within ABZR87_RS00505 at 104.211 kb on - strand, within ABZR87_RS00505 at 104.211 kb on - strand, within ABZR87_RS00505 at 104.211 kb on - strand, within ABZR87_RS00505 at 104.211 kb on - strand, within ABZR87_RS00505 at 104.211 kb on - strand, within ABZR87_RS00505 at 104.298 kb on - strand, within ABZR87_RS00505 at 104.360 kb on + strand, within ABZR87_RS00505 at 104.516 kb on + strand, within ABZR87_RS00505 at 104.516 kb on + strand, within ABZR87_RS00505 at 104.517 kb on - strand, within ABZR87_RS00505 at 104.517 kb on - strand, within ABZR87_RS00505 at 104.602 kb on + strand, within ABZR87_RS00505 at 104.603 kb on - strand, within ABZR87_RS00505 at 104.735 kb on + strand at 104.735 kb on + strand at 104.735 kb on + strand at 104.736 kb on - strand at 104.736 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 6; outgrowth in LB remove 101,987 + ABZR87_RS00490 0.70 -0.7 101,987 + ABZR87_RS00490 0.70 +1.4 101,987 + ABZR87_RS00490 0.70 -1.9 101,988 - ABZR87_RS00490 0.71 +0.1 101,988 - ABZR87_RS00490 0.71 -0.4 101,988 - ABZR87_RS00490 0.71 +0.1 102,185 + +0.8 102,185 + +0.2 102,185 + +0.8 102,185 + -0.4 102,186 - +1.0 102,270 - +1.6 102,306 - -0.1 102,377 + ABZR87_RS00495 0.23 +0.6 102,377 + ABZR87_RS00495 0.23 -0.0 102,377 + ABZR87_RS00495 0.23 -0.8 102,377 + ABZR87_RS00495 0.23 -0.2 102,377 + ABZR87_RS00495 0.23 +0.0 102,377 + ABZR87_RS00495 0.23 -0.6 102,377 + ABZR87_RS00495 0.23 -0.4 102,378 - ABZR87_RS00495 0.24 +0.6 102,378 - ABZR87_RS00495 0.24 +1.3 102,378 - ABZR87_RS00495 0.24 +0.7 102,378 - ABZR87_RS00495 0.24 -1.9 102,378 - ABZR87_RS00495 0.24 +0.7 102,378 - ABZR87_RS00495 0.24 -0.7 102,378 - ABZR87_RS00495 0.24 +0.6 102,393 - ABZR87_RS00495 0.27 -0.4 102,485 + ABZR87_RS00495 0.46 -0.9 102,485 + ABZR87_RS00495 0.46 +0.5 102,486 - ABZR87_RS00495 0.47 -0.3 102,486 - ABZR87_RS00495 0.47 +0.0 102,486 - ABZR87_RS00495 0.47 +0.6 102,486 - ABZR87_RS00495 0.47 +0.1 102,521 + ABZR87_RS00495 0.54 -0.3 102,560 + ABZR87_RS00495 0.62 -0.2 102,560 + ABZR87_RS00495 0.62 +0.5 102,561 - ABZR87_RS00495 0.63 +0.6 102,639 + ABZR87_RS00495 0.79 -0.5 103,063 + ABZR87_RS00500 0.30 +0.5 103,063 + ABZR87_RS00500 0.30 +0.9 103,063 + ABZR87_RS00500 0.30 +1.1 103,063 + ABZR87_RS00500 0.30 -0.1 103,063 + ABZR87_RS00500 0.30 -1.1 103,064 - ABZR87_RS00500 0.30 -0.3 103,064 - ABZR87_RS00500 0.30 -0.1 103,064 - ABZR87_RS00500 0.30 -1.6 103,064 - ABZR87_RS00500 0.30 -1.1 103,379 + ABZR87_RS00500 0.63 -1.0 103,522 + ABZR87_RS00500 0.78 -0.6 103,523 - ABZR87_RS00500 0.78 -0.3 103,523 - ABZR87_RS00500 0.78 -0.7 103,936 + ABZR87_RS00505 0.15 +0.0 103,936 + ABZR87_RS00505 0.15 +0.8 103,937 - ABZR87_RS00505 0.15 -1.4 103,976 - ABZR87_RS00505 0.19 -0.6 104,210 + ABZR87_RS00505 0.45 +0.2 104,210 + ABZR87_RS00505 0.45 -1.1 104,210 + ABZR87_RS00505 0.45 -0.8 104,210 + ABZR87_RS00505 0.45 +0.2 104,210 + ABZR87_RS00505 0.45 -1.1 104,211 - ABZR87_RS00505 0.45 +0.3 104,211 - ABZR87_RS00505 0.45 +1.1 104,211 - ABZR87_RS00505 0.45 +1.5 104,211 - ABZR87_RS00505 0.45 +0.8 104,211 - ABZR87_RS00505 0.45 -1.6 104,298 - ABZR87_RS00505 0.55 +1.0 104,360 + ABZR87_RS00505 0.61 +0.4 104,516 + ABZR87_RS00505 0.79 -0.0 104,516 + ABZR87_RS00505 0.79 -0.3 104,517 - ABZR87_RS00505 0.79 +1.3 104,517 - ABZR87_RS00505 0.79 -0.6 104,602 + ABZR87_RS00505 0.88 +0.5 104,603 - ABZR87_RS00505 0.88 -1.0 104,735 + -1.0 104,735 + -1.9 104,735 + +0.5 104,736 - +0.9 104,736 - -0.7
Or see this region's nucleotide sequence