Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3629

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3628 and Rru_A3629 are separated by 314 nucleotidesRru_A3629 and Rru_A3630 are separated by 8 nucleotidesRru_A3630 and Rru_A3631 overlap by 14 nucleotides Rru_A3628: Rru_A3628 - ParB-like partition protein (NCBI), at 4,168,150 to 4,169,130 _A3628 Rru_A3629: Rru_A3629 - DNA polymerase III, delta subunit (NCBI), at 4,169,445 to 4,170,473 _A3629 Rru_A3630: Rru_A3630 - Twin-arginine translocation pathway signal (NCBI), at 4,170,482 to 4,171,045 _A3630 Rru_A3631: Rru_A3631 - Leucyl-tRNA synthetase, class Ia (NCBI), at 4,171,032 to 4,173,620 _A3631 Position (kb) 4169 4170 4171Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4168.885 kb on - strand, within Rru_A3628at 4169.024 kb on - strand, within Rru_A3628at 4169.028 kb on + strand, within Rru_A3628at 4169.287 kb on + strandat 4169.288 kb on - strandat 4170.523 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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4,168,885 - Rru_A3628 0.75 -3.9
4,169,024 - Rru_A3628 0.89 -1.9
4,169,028 + Rru_A3628 0.90 -0.8
4,169,287 + +0.3
4,169,288 - +0.3
4,170,523 - +1.6

Or see this region's nucleotide sequence