Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3613 and Rru_A3614 overlap by 4 nucleotides Rru_A3614 and Rru_A3615 overlap by 4 nucleotides Rru_A3615 and Rru_A3616 are separated by 491 nucleotides
Rru_A3613: Rru_A3613 - Quinate/Shikimate 5-dehydrogenase (NCBI), at 4,151,909 to 4,152,760
_A3613
Rru_A3614: Rru_A3614 - Maf-like protein (NCBI), at 4,152,757 to 4,153,365
_A3614
Rru_A3615: Rru_A3615 - Protein of unknown function DUF299 (NCBI), at 4,153,362 to 4,154,189
_A3615
Rru_A3616: Rru_A3616 - Uroporphyrinogen decarboxylase HemE (NCBI), at 4,154,681 to 4,155,727
_A3616
Position (kb)
4153
4154
4155 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4152.811 kb on + strand at 4152.881 kb on + strand, within Rru_A3614 at 4152.881 kb on + strand, within Rru_A3614 at 4152.882 kb on - strand, within Rru_A3614 at 4152.882 kb on - strand, within Rru_A3614 at 4152.926 kb on + strand, within Rru_A3614 at 4152.926 kb on + strand, within Rru_A3614 at 4152.927 kb on - strand, within Rru_A3614 at 4153.095 kb on + strand, within Rru_A3614 at 4153.096 kb on - strand, within Rru_A3614 at 4153.096 kb on - strand, within Rru_A3614 at 4153.472 kb on - strand, within Rru_A3615 at 4153.707 kb on - strand, within Rru_A3615 at 4153.849 kb on + strand, within Rru_A3615 at 4153.850 kb on - strand, within Rru_A3615 at 4153.850 kb on - strand, within Rru_A3615 at 4153.850 kb on - strand, within Rru_A3615 at 4153.937 kb on + strand, within Rru_A3615 at 4153.937 kb on + strand, within Rru_A3615 at 4153.937 kb on + strand, within Rru_A3615 at 4153.938 kb on - strand, within Rru_A3615 at 4153.995 kb on - strand, within Rru_A3615 at 4153.995 kb on - strand, within Rru_A3615 at 4154.472 kb on + strand at 4154.605 kb on + strand at 4154.605 kb on + strand at 4154.606 kb on - strand at 4154.606 kb on - strand at 4154.606 kb on - strand at 4154.607 kb on + strand at 4154.607 kb on + strand at 4154.607 kb on + strand at 4154.607 kb on + strand at 4154.607 kb on + strand at 4154.608 kb on - strand at 4154.610 kb on + strand at 4154.610 kb on + strand at 4154.610 kb on + strand at 4154.610 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 4,152,811 + -0.2 4,152,881 + Rru_A3614 0.20 +0.0 4,152,881 + Rru_A3614 0.20 -0.0 4,152,882 - Rru_A3614 0.21 +0.6 4,152,882 - Rru_A3614 0.21 -1.8 4,152,926 + Rru_A3614 0.28 +1.0 4,152,926 + Rru_A3614 0.28 -1.0 4,152,927 - Rru_A3614 0.28 -0.3 4,153,095 + Rru_A3614 0.56 +0.0 4,153,096 - Rru_A3614 0.56 +2.4 4,153,096 - Rru_A3614 0.56 -0.2 4,153,472 - Rru_A3615 0.13 -0.2 4,153,707 - Rru_A3615 0.42 -2.0 4,153,849 + Rru_A3615 0.59 +0.1 4,153,850 - Rru_A3615 0.59 -1.3 4,153,850 - Rru_A3615 0.59 +0.3 4,153,850 - Rru_A3615 0.59 +0.7 4,153,937 + Rru_A3615 0.69 -3.1 4,153,937 + Rru_A3615 0.69 -2.0 4,153,937 + Rru_A3615 0.69 +0.5 4,153,938 - Rru_A3615 0.70 -0.8 4,153,995 - Rru_A3615 0.76 -1.7 4,153,995 - Rru_A3615 0.76 -0.4 4,154,472 + +0.0 4,154,605 + +1.2 4,154,605 + +0.1 4,154,606 - -0.1 4,154,606 - -1.7 4,154,606 - +0.2 4,154,607 + -0.2 4,154,607 + -1.7 4,154,607 + +0.6 4,154,607 + +0.4 4,154,607 + +0.5 4,154,608 - -0.8 4,154,610 + +0.2 4,154,610 + -1.8 4,154,610 + -0.3 4,154,610 + -0.4
Or see this region's nucleotide sequence