Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3537

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3535 and Rru_A3536 are separated by 107 nucleotidesRru_A3536 and Rru_A3537 are separated by 251 nucleotidesRru_A3537 and Rru_A3538 overlap by 4 nucleotides Rru_A3535: Rru_A3535 - Tryptophanyl-tRNA synthetase, class Ib (NCBI), at 4,066,271 to 4,067,269 _A3535 Rru_A3536: Rru_A3536 - Nitroreductase (NCBI), at 4,067,377 to 4,068,012 _A3536 Rru_A3537: Rru_A3537 - Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain (NCBI), at 4,068,264 to 4,068,560 _A3537 Rru_A3538: Rru_A3538 - Virulence factor MVIN-like (NCBI), at 4,068,557 to 4,070,098 _A3538 Position (kb) 4068 4069Strain fitness (log2 ratio) -2 -1 0 1at 4067.657 kb on - strand, within Rru_A3536at 4067.777 kb on - strand, within Rru_A3536at 4067.799 kb on + strand, within Rru_A3536at 4067.915 kb on - strand, within Rru_A3536at 4068.051 kb on + strandat 4068.051 kb on + strandat 4068.052 kb on - strandat 4068.064 kb on - strandat 4068.064 kb on - strandat 4068.085 kb on + strandat 4068.085 kb on + strandat 4068.085 kb on + strandat 4068.085 kb on + strandat 4068.086 kb on - strandat 4068.086 kb on - strandat 4068.086 kb on - strandat 4068.086 kb on - strandat 4068.086 kb on - strandat 4068.086 kb on - strandat 4068.086 kb on - strandat 4068.086 kb on - strandat 4068.086 kb on - strandat 4068.200 kb on + strandat 4068.211 kb on + strandat 4068.219 kb on + strandat 4068.220 kb on - strandat 4068.503 kb on - strand, within Rru_A3537at 4068.503 kb on - strand, within Rru_A3537at 4068.558 kb on + strandat 4068.559 kb on - strandat 4068.559 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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4,067,657 - Rru_A3536 0.44 +0.5
4,067,777 - Rru_A3536 0.63 +0.2
4,067,799 + Rru_A3536 0.66 +0.4
4,067,915 - Rru_A3536 0.85 +1.3
4,068,051 + -0.3
4,068,051 + +0.6
4,068,052 - -0.2
4,068,064 - -2.3
4,068,064 - +0.6
4,068,085 + -0.1
4,068,085 + +0.1
4,068,085 + +0.3
4,068,085 + -1.0
4,068,086 - -0.1
4,068,086 - -0.2
4,068,086 - -0.3
4,068,086 - +0.2
4,068,086 - +0.2
4,068,086 - -0.1
4,068,086 - -0.0
4,068,086 - -0.2
4,068,086 - -0.3
4,068,200 + +0.8
4,068,211 + +0.1
4,068,219 + +1.1
4,068,220 - +1.4
4,068,503 - Rru_A3537 0.80 -0.2
4,068,503 - Rru_A3537 0.80 -0.3
4,068,558 + -0.7
4,068,559 - +0.8
4,068,559 - +1.2

Or see this region's nucleotide sequence