Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3184

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3182 and Rru_A3183 are separated by 2 nucleotidesRru_A3183 and Rru_A3184 are separated by 11 nucleotidesRru_A3184 and Rru_A3185 overlap by 4 nucleotidesRru_A3185 and Rru_A3186 are separated by 118 nucleotidesRru_A3186 and Rru_A3187 are separated by 3 nucleotides Rru_A3182: Rru_A3182 - Auxin Efflux Carrier (NCBI), at 3,673,301 to 3,674,227 _A3182 Rru_A3183: Rru_A3183 - diheme cytochrome c (NCBI), at 3,674,230 to 3,674,718 _A3183 Rru_A3184: Rru_A3184 - hypothetical protein (NCBI), at 3,674,730 to 3,675,626 _A3184 Rru_A3185: Rru_A3185 - hypothetical protein (NCBI), at 3,675,623 to 3,675,934 _A3185 Rru_A3186: Rru_A3186 - hypothetical protein (NCBI), at 3,676,053 to 3,676,460 _A3186 Rru_A3187: Rru_A3187 - Two component Transcriptional regulator, Winged helix family (NCBI), at 3,676,464 to 3,677,153 _A3187 Position (kb) 3674 3675 3676Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3673.944 kb on + strand, within Rru_A3182at 3673.944 kb on + strand, within Rru_A3182at 3674.114 kb on + strand, within Rru_A3182at 3674.114 kb on + strand, within Rru_A3182at 3674.115 kb on - strand, within Rru_A3182at 3674.225 kb on + strandat 3674.231 kb on + strandat 3674.231 kb on + strandat 3674.358 kb on + strand, within Rru_A3183at 3674.359 kb on - strand, within Rru_A3183at 3674.583 kb on + strand, within Rru_A3183at 3674.583 kb on + strand, within Rru_A3183at 3674.755 kb on + strandat 3674.983 kb on + strand, within Rru_A3184at 3675.334 kb on - strand, within Rru_A3184at 3675.514 kb on + strand, within Rru_A3184at 3675.538 kb on + strandat 3675.542 kb on + strandat 3675.542 kb on + strandat 3675.542 kb on + strandat 3675.543 kb on - strandat 3675.543 kb on - strandat 3675.543 kb on - strandat 3675.543 kb on - strandat 3675.562 kb on + strandat 3675.562 kb on + strandat 3675.562 kb on + strandat 3675.563 kb on - strandat 3675.563 kb on - strandat 3675.563 kb on - strandat 3676.041 kb on - strandat 3676.363 kb on - strand, within Rru_A3186at 3676.363 kb on - strand, within Rru_A3186at 3676.363 kb on - strand, within Rru_A3186at 3676.363 kb on - strand, within Rru_A3186at 3676.458 kb on + strandat 3676.458 kb on + strandat 3676.459 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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3,673,944 + Rru_A3182 0.69 -0.1
3,673,944 + Rru_A3182 0.69 -1.0
3,674,114 + Rru_A3182 0.88 +0.8
3,674,114 + Rru_A3182 0.88 -0.1
3,674,115 - Rru_A3182 0.88 +0.9
3,674,225 + -0.6
3,674,231 + -2.0
3,674,231 + +1.7
3,674,358 + Rru_A3183 0.26 -0.6
3,674,359 - Rru_A3183 0.26 -0.9
3,674,583 + Rru_A3183 0.72 +0.2
3,674,583 + Rru_A3183 0.72 +0.3
3,674,755 + -0.9
3,674,983 + Rru_A3184 0.28 +0.3
3,675,334 - Rru_A3184 0.67 -0.9
3,675,514 + Rru_A3184 0.87 +1.2
3,675,538 + -2.4
3,675,542 + +0.2
3,675,542 + +1.3
3,675,542 + -1.1
3,675,543 - +0.0
3,675,543 - +2.3
3,675,543 - +1.1
3,675,543 - +0.5
3,675,562 + -2.8
3,675,562 + +0.9
3,675,562 + -0.7
3,675,563 - -0.1
3,675,563 - -0.1
3,675,563 - -0.2
3,676,041 - -0.4
3,676,363 - Rru_A3186 0.76 +0.4
3,676,363 - Rru_A3186 0.76 +0.5
3,676,363 - Rru_A3186 0.76 -4.8
3,676,363 - Rru_A3186 0.76 -0.3
3,676,458 + +0.4
3,676,458 + -2.3
3,676,459 - +0.0

Or see this region's nucleotide sequence