Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3156

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3155 and Rru_A3156 are separated by 58 nucleotidesRru_A3156 and Rru_A3157 are separated by 148 nucleotides Rru_A3155: Rru_A3155 - hypothetical protein (NCBI), at 3,644,722 to 3,646,263 _A3155 Rru_A3156: Rru_A3156 - von Willebrand factor, type A (NCBI), at 3,646,322 to 3,648,049 _A3156 Rru_A3157: Rru_A3157 - hypothetical protein (NCBI), at 3,648,198 to 3,649,415 _A3157 Position (kb) 3646 3647 3648 3649Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3645.484 kb on - strand, within Rru_A3155at 3645.495 kb on - strand, within Rru_A3155at 3645.963 kb on - strand, within Rru_A3155at 3645.963 kb on - strand, within Rru_A3155at 3646.124 kb on + strandat 3646.324 kb on - strandat 3646.543 kb on + strand, within Rru_A3156at 3646.543 kb on + strand, within Rru_A3156at 3646.695 kb on + strand, within Rru_A3156at 3646.696 kb on - strand, within Rru_A3156at 3646.698 kb on + strand, within Rru_A3156at 3646.698 kb on + strand, within Rru_A3156at 3646.699 kb on - strand, within Rru_A3156at 3646.699 kb on - strand, within Rru_A3156at 3646.699 kb on - strand, within Rru_A3156at 3646.699 kb on - strand, within Rru_A3156at 3646.699 kb on - strand, within Rru_A3156at 3646.736 kb on + strand, within Rru_A3156at 3646.736 kb on + strand, within Rru_A3156at 3646.737 kb on - strand, within Rru_A3156at 3647.269 kb on + strand, within Rru_A3156at 3647.644 kb on - strand, within Rru_A3156at 3647.668 kb on + strand, within Rru_A3156at 3648.093 kb on + strandat 3648.094 kb on - strandat 3648.132 kb on - strandat 3648.197 kb on + strandat 3648.426 kb on + strand, within Rru_A3157

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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3,645,484 - Rru_A3155 0.49 -0.4
3,645,495 - Rru_A3155 0.50 -0.2
3,645,963 - Rru_A3155 0.80 +0.1
3,645,963 - Rru_A3155 0.80 -3.6
3,646,124 + -3.1
3,646,324 - -1.3
3,646,543 + Rru_A3156 0.13 +0.2
3,646,543 + Rru_A3156 0.13 -1.5
3,646,695 + Rru_A3156 0.22 +2.4
3,646,696 - Rru_A3156 0.22 -0.9
3,646,698 + Rru_A3156 0.22 +0.8
3,646,698 + Rru_A3156 0.22 -3.8
3,646,699 - Rru_A3156 0.22 -3.2
3,646,699 - Rru_A3156 0.22 -4.2
3,646,699 - Rru_A3156 0.22 -1.9
3,646,699 - Rru_A3156 0.22 -2.6
3,646,699 - Rru_A3156 0.22 -1.1
3,646,736 + Rru_A3156 0.24 +0.8
3,646,736 + Rru_A3156 0.24 -1.0
3,646,737 - Rru_A3156 0.24 -2.5
3,647,269 + Rru_A3156 0.55 -2.4
3,647,644 - Rru_A3156 0.77 +0.6
3,647,668 + Rru_A3156 0.78 -2.6
3,648,093 + +2.0
3,648,094 - -0.3
3,648,132 - +0.2
3,648,197 + +1.4
3,648,426 + Rru_A3157 0.19 +1.2

Or see this region's nucleotide sequence