Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3155 and Rru_A3156 are separated by 58 nucleotides Rru_A3156 and Rru_A3157 are separated by 148 nucleotides
Rru_A3155: Rru_A3155 - hypothetical protein (NCBI), at 3,644,722 to 3,646,263
_A3155
Rru_A3156: Rru_A3156 - von Willebrand factor, type A (NCBI), at 3,646,322 to 3,648,049
_A3156
Rru_A3157: Rru_A3157 - hypothetical protein (NCBI), at 3,648,198 to 3,649,415
_A3157
Position (kb)
3646
3647
3648
3649 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3645.484 kb on - strand, within Rru_A3155 at 3645.495 kb on - strand, within Rru_A3155 at 3645.963 kb on - strand, within Rru_A3155 at 3645.963 kb on - strand, within Rru_A3155 at 3646.124 kb on + strand at 3646.324 kb on - strand at 3646.543 kb on + strand, within Rru_A3156 at 3646.543 kb on + strand, within Rru_A3156 at 3646.695 kb on + strand, within Rru_A3156 at 3646.696 kb on - strand, within Rru_A3156 at 3646.698 kb on + strand, within Rru_A3156 at 3646.698 kb on + strand, within Rru_A3156 at 3646.699 kb on - strand, within Rru_A3156 at 3646.699 kb on - strand, within Rru_A3156 at 3646.699 kb on - strand, within Rru_A3156 at 3646.699 kb on - strand, within Rru_A3156 at 3646.699 kb on - strand, within Rru_A3156 at 3646.736 kb on + strand, within Rru_A3156 at 3646.736 kb on + strand, within Rru_A3156 at 3646.737 kb on - strand, within Rru_A3156 at 3647.269 kb on + strand, within Rru_A3156 at 3647.644 kb on - strand, within Rru_A3156 at 3647.668 kb on + strand, within Rru_A3156 at 3648.093 kb on + strand at 3648.094 kb on - strand at 3648.132 kb on - strand at 3648.197 kb on + strand at 3648.426 kb on + strand, within Rru_A3157
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 3,645,484 - Rru_A3155 0.49 -0.4 3,645,495 - Rru_A3155 0.50 -0.2 3,645,963 - Rru_A3155 0.80 +0.1 3,645,963 - Rru_A3155 0.80 -3.6 3,646,124 + -3.1 3,646,324 - -1.3 3,646,543 + Rru_A3156 0.13 +0.2 3,646,543 + Rru_A3156 0.13 -1.5 3,646,695 + Rru_A3156 0.22 +2.4 3,646,696 - Rru_A3156 0.22 -0.9 3,646,698 + Rru_A3156 0.22 +0.8 3,646,698 + Rru_A3156 0.22 -3.8 3,646,699 - Rru_A3156 0.22 -3.2 3,646,699 - Rru_A3156 0.22 -4.2 3,646,699 - Rru_A3156 0.22 -1.9 3,646,699 - Rru_A3156 0.22 -2.6 3,646,699 - Rru_A3156 0.22 -1.1 3,646,736 + Rru_A3156 0.24 +0.8 3,646,736 + Rru_A3156 0.24 -1.0 3,646,737 - Rru_A3156 0.24 -2.5 3,647,269 + Rru_A3156 0.55 -2.4 3,647,644 - Rru_A3156 0.77 +0.6 3,647,668 + Rru_A3156 0.78 -2.6 3,648,093 + +2.0 3,648,094 - -0.3 3,648,132 - +0.2 3,648,197 + +1.4 3,648,426 + Rru_A3157 0.19 +1.2
Or see this region's nucleotide sequence