Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2849 and Rru_A2850 overlap by 1 nucleotides Rru_A2850 and Rru_A2851 are separated by 3 nucleotides Rru_A2851 and Rru_A2852 are separated by 164 nucleotides
Rru_A2849: Rru_A2849 - Flagellar P-ring protein (NCBI), at 3,279,071 to 3,280,222
_A2849
Rru_A2850: Rru_A2850 - hypothetical protein (NCBI), at 3,280,222 to 3,280,551
_A2850
Rru_A2851: Rru_A2851 - hypothetical protein (NCBI), at 3,280,555 to 3,281,361
_A2851
Rru_A2852: Rru_A2852 - hypothetical protein (NCBI), at 3,281,526 to 3,283,709
_A2852
Position (kb)
3280
3281 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3279.226 kb on + strand, within Rru_A2849 at 3279.226 kb on + strand, within Rru_A2849 at 3279.226 kb on + strand, within Rru_A2849 at 3279.226 kb on + strand, within Rru_A2849 at 3279.226 kb on + strand, within Rru_A2849 at 3279.227 kb on - strand, within Rru_A2849 at 3279.227 kb on - strand, within Rru_A2849 at 3279.521 kb on + strand, within Rru_A2849 at 3279.522 kb on - strand, within Rru_A2849 at 3279.522 kb on - strand, within Rru_A2849 at 3279.522 kb on - strand, within Rru_A2849 at 3279.522 kb on - strand, within Rru_A2849 at 3279.558 kb on - strand, within Rru_A2849 at 3279.653 kb on - strand, within Rru_A2849 at 3279.653 kb on - strand, within Rru_A2849 at 3279.806 kb on + strand, within Rru_A2849 at 3279.806 kb on + strand, within Rru_A2849 at 3280.049 kb on - strand, within Rru_A2849 at 3280.102 kb on + strand, within Rru_A2849 at 3280.314 kb on + strand, within Rru_A2850 at 3280.314 kb on + strand, within Rru_A2850 at 3280.315 kb on - strand, within Rru_A2850 at 3280.315 kb on - strand, within Rru_A2850 at 3280.315 kb on - strand, within Rru_A2850 at 3280.563 kb on - strand at 3281.065 kb on + strand, within Rru_A2851 at 3281.068 kb on + strand, within Rru_A2851 at 3281.069 kb on - strand, within Rru_A2851 at 3281.069 kb on - strand, within Rru_A2851 at 3281.069 kb on - strand, within Rru_A2851 at 3281.108 kb on + strand, within Rru_A2851 at 3281.141 kb on + strand, within Rru_A2851 at 3281.141 kb on + strand, within Rru_A2851 at 3281.141 kb on + strand, within Rru_A2851 at 3281.142 kb on - strand, within Rru_A2851 at 3281.142 kb on - strand, within Rru_A2851 at 3281.142 kb on - strand, within Rru_A2851 at 3281.142 kb on - strand, within Rru_A2851 at 3281.284 kb on + strand at 3281.284 kb on + strand at 3281.285 kb on - strand at 3281.347 kb on - strand at 3281.347 kb on - strand at 3281.360 kb on - strand at 3281.412 kb on - strand at 3281.412 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 3,279,226 + Rru_A2849 0.13 -1.1 3,279,226 + Rru_A2849 0.13 +1.0 3,279,226 + Rru_A2849 0.13 -0.1 3,279,226 + Rru_A2849 0.13 +0.0 3,279,226 + Rru_A2849 0.13 -0.1 3,279,227 - Rru_A2849 0.14 +0.3 3,279,227 - Rru_A2849 0.14 -1.2 3,279,521 + Rru_A2849 0.39 -0.3 3,279,522 - Rru_A2849 0.39 -2.4 3,279,522 - Rru_A2849 0.39 -1.8 3,279,522 - Rru_A2849 0.39 -0.1 3,279,522 - Rru_A2849 0.39 +0.4 3,279,558 - Rru_A2849 0.42 -0.4 3,279,653 - Rru_A2849 0.51 +0.2 3,279,653 - Rru_A2849 0.51 -0.2 3,279,806 + Rru_A2849 0.64 -0.6 3,279,806 + Rru_A2849 0.64 -0.9 3,280,049 - Rru_A2849 0.85 -1.9 3,280,102 + Rru_A2849 0.89 -3.0 3,280,314 + Rru_A2850 0.28 -0.2 3,280,314 + Rru_A2850 0.28 -3.8 3,280,315 - Rru_A2850 0.28 +2.6 3,280,315 - Rru_A2850 0.28 -0.1 3,280,315 - Rru_A2850 0.28 +0.2 3,280,563 - +2.0 3,281,065 + Rru_A2851 0.63 -2.5 3,281,068 + Rru_A2851 0.64 -0.5 3,281,069 - Rru_A2851 0.64 +0.3 3,281,069 - Rru_A2851 0.64 -1.5 3,281,069 - Rru_A2851 0.64 -1.9 3,281,108 + Rru_A2851 0.69 +0.1 3,281,141 + Rru_A2851 0.73 +0.7 3,281,141 + Rru_A2851 0.73 -0.2 3,281,141 + Rru_A2851 0.73 -0.0 3,281,142 - Rru_A2851 0.73 +0.8 3,281,142 - Rru_A2851 0.73 -0.6 3,281,142 - Rru_A2851 0.73 +0.1 3,281,142 - Rru_A2851 0.73 +0.1 3,281,284 + +0.4 3,281,284 + -1.4 3,281,285 - -0.5 3,281,347 - -3.9 3,281,347 - +0.1 3,281,360 - -0.4 3,281,412 - +1.5 3,281,412 - -0.7
Or see this region's nucleotide sequence