Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2756

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2754 and Rru_A2755 overlap by 122 nucleotidesRru_A2755 and Rru_A2756 are separated by 384 nucleotidesRru_A2756 and Rru_A2757 overlap by 2 nucleotides Rru_A2754: Rru_A2754 - Cold-shock DNA-binding domain protein (NCBI), at 3,187,318 to 3,187,530 _A2754 Rru_A2755: Rru_A2755 - hypothetical protein (NCBI), at 3,187,409 to 3,187,777 _A2755 Rru_A2756: Rru_A2756 - hypothetical protein (NCBI), at 3,188,162 to 3,188,671 _A2756 Rru_A2757: Rru_A2757 - chemotaxis sensory transducer (NCBI), at 3,188,670 to 3,190,445 _A2757 Position (kb) 3188 3189Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3187.174 kb on + strandat 3187.174 kb on + strandat 3187.174 kb on + strandat 3187.174 kb on + strandat 3187.175 kb on - strandat 3187.175 kb on - strandat 3187.175 kb on - strandat 3187.175 kb on - strandat 3187.238 kb on - strandat 3187.238 kb on - strandat 3187.245 kb on + strandat 3187.245 kb on + strandat 3187.297 kb on - strandat 3187.297 kb on - strandat 3187.303 kb on + strandat 3187.303 kb on + strandat 3187.303 kb on + strandat 3187.303 kb on + strandat 3187.303 kb on + strandat 3187.335 kb on + strandat 3187.418 kb on + strandat 3187.648 kb on - strand, within Rru_A2755at 3187.944 kb on - strandat 3188.021 kb on + strandat 3188.039 kb on + strandat 3188.048 kb on - strandat 3188.063 kb on - strandat 3188.069 kb on - strandat 3188.154 kb on + strandat 3188.155 kb on - strandat 3188.163 kb on + strandat 3188.163 kb on + strandat 3188.163 kb on + strandat 3188.163 kb on + strandat 3188.164 kb on - strandat 3188.164 kb on - strandat 3188.164 kb on - strandat 3188.164 kb on - strandat 3188.184 kb on - strandat 3188.237 kb on + strand, within Rru_A2756at 3188.474 kb on + strand, within Rru_A2756at 3188.476 kb on + strand, within Rru_A2756at 3188.476 kb on + strand, within Rru_A2756at 3188.477 kb on - strand, within Rru_A2756at 3188.547 kb on + strand, within Rru_A2756at 3188.547 kb on + strand, within Rru_A2756at 3188.547 kb on + strand, within Rru_A2756at 3188.937 kb on - strand, within Rru_A2757at 3189.016 kb on + strand, within Rru_A2757at 3189.016 kb on + strand, within Rru_A2757at 3189.017 kb on - strand, within Rru_A2757at 3189.161 kb on + strand, within Rru_A2757at 3189.514 kb on + strand, within Rru_A2757at 3189.514 kb on + strand, within Rru_A2757at 3189.514 kb on + strand, within Rru_A2757at 3189.514 kb on + strand, within Rru_A2757at 3189.515 kb on - strand, within Rru_A2757

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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3,187,174 + +0.4
3,187,174 + -1.6
3,187,174 + -0.6
3,187,174 + -1.7
3,187,175 - +0.2
3,187,175 - +1.0
3,187,175 - +0.2
3,187,175 - -0.1
3,187,238 - -0.6
3,187,238 - -0.3
3,187,245 + -3.9
3,187,245 + -1.7
3,187,297 - +0.5
3,187,297 - +0.2
3,187,303 + -3.5
3,187,303 + -0.0
3,187,303 + -3.7
3,187,303 + +1.5
3,187,303 + -3.9
3,187,335 + +0.3
3,187,418 + +0.2
3,187,648 - Rru_A2755 0.65 +0.0
3,187,944 - -1.1
3,188,021 + +0.3
3,188,039 + +0.0
3,188,048 - +0.3
3,188,063 - +0.5
3,188,069 - -0.2
3,188,154 + -0.0
3,188,155 - -0.8
3,188,163 + -0.4
3,188,163 + -1.5
3,188,163 + +0.2
3,188,163 + -0.1
3,188,164 - +0.2
3,188,164 - +0.1
3,188,164 - +0.5
3,188,164 - -1.3
3,188,184 - +0.8
3,188,237 + Rru_A2756 0.15 -0.7
3,188,474 + Rru_A2756 0.61 -0.6
3,188,476 + Rru_A2756 0.62 -1.1
3,188,476 + Rru_A2756 0.62 +0.4
3,188,477 - Rru_A2756 0.62 +0.2
3,188,547 + Rru_A2756 0.75 -0.5
3,188,547 + Rru_A2756 0.75 -2.6
3,188,547 + Rru_A2756 0.75 +0.4
3,188,937 - Rru_A2757 0.15 -1.6
3,189,016 + Rru_A2757 0.19 +1.1
3,189,016 + Rru_A2757 0.19 -0.6
3,189,017 - Rru_A2757 0.20 -0.2
3,189,161 + Rru_A2757 0.28 +0.6
3,189,514 + Rru_A2757 0.48 +0.1
3,189,514 + Rru_A2757 0.48 +0.5
3,189,514 + Rru_A2757 0.48 +0.4
3,189,514 + Rru_A2757 0.48 +0.0
3,189,515 - Rru_A2757 0.48 -0.7

Or see this region's nucleotide sequence