Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2754 and Rru_A2755 overlap by 122 nucleotides Rru_A2755 and Rru_A2756 are separated by 384 nucleotides Rru_A2756 and Rru_A2757 overlap by 2 nucleotides
Rru_A2754: Rru_A2754 - Cold-shock DNA-binding domain protein (NCBI), at 3,187,318 to 3,187,530
_A2754
Rru_A2755: Rru_A2755 - hypothetical protein (NCBI), at 3,187,409 to 3,187,777
_A2755
Rru_A2756: Rru_A2756 - hypothetical protein (NCBI), at 3,188,162 to 3,188,671
_A2756
Rru_A2757: Rru_A2757 - chemotaxis sensory transducer (NCBI), at 3,188,670 to 3,190,445
_A2757
Position (kb)
3188
3189 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3187.174 kb on + strand at 3187.174 kb on + strand at 3187.174 kb on + strand at 3187.174 kb on + strand at 3187.175 kb on - strand at 3187.175 kb on - strand at 3187.175 kb on - strand at 3187.175 kb on - strand at 3187.238 kb on - strand at 3187.238 kb on - strand at 3187.245 kb on + strand at 3187.245 kb on + strand at 3187.297 kb on - strand at 3187.297 kb on - strand at 3187.303 kb on + strand at 3187.303 kb on + strand at 3187.303 kb on + strand at 3187.303 kb on + strand at 3187.303 kb on + strand at 3187.335 kb on + strand at 3187.418 kb on + strand at 3187.648 kb on - strand, within Rru_A2755 at 3187.944 kb on - strand at 3188.021 kb on + strand at 3188.039 kb on + strand at 3188.048 kb on - strand at 3188.063 kb on - strand at 3188.069 kb on - strand at 3188.154 kb on + strand at 3188.155 kb on - strand at 3188.163 kb on + strand at 3188.163 kb on + strand at 3188.163 kb on + strand at 3188.163 kb on + strand at 3188.164 kb on - strand at 3188.164 kb on - strand at 3188.164 kb on - strand at 3188.164 kb on - strand at 3188.184 kb on - strand at 3188.237 kb on + strand, within Rru_A2756 at 3188.474 kb on + strand, within Rru_A2756 at 3188.476 kb on + strand, within Rru_A2756 at 3188.476 kb on + strand, within Rru_A2756 at 3188.477 kb on - strand, within Rru_A2756 at 3188.547 kb on + strand, within Rru_A2756 at 3188.547 kb on + strand, within Rru_A2756 at 3188.547 kb on + strand, within Rru_A2756 at 3188.937 kb on - strand, within Rru_A2757 at 3189.016 kb on + strand, within Rru_A2757 at 3189.016 kb on + strand, within Rru_A2757 at 3189.017 kb on - strand, within Rru_A2757 at 3189.161 kb on + strand, within Rru_A2757 at 3189.514 kb on + strand, within Rru_A2757 at 3189.514 kb on + strand, within Rru_A2757 at 3189.514 kb on + strand, within Rru_A2757 at 3189.514 kb on + strand, within Rru_A2757 at 3189.515 kb on - strand, within Rru_A2757
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 3,187,174 + +0.4 3,187,174 + -1.6 3,187,174 + -0.6 3,187,174 + -1.7 3,187,175 - +0.2 3,187,175 - +1.0 3,187,175 - +0.2 3,187,175 - -0.1 3,187,238 - -0.6 3,187,238 - -0.3 3,187,245 + -3.9 3,187,245 + -1.7 3,187,297 - +0.5 3,187,297 - +0.2 3,187,303 + -3.5 3,187,303 + -0.0 3,187,303 + -3.7 3,187,303 + +1.5 3,187,303 + -3.9 3,187,335 + +0.3 3,187,418 + +0.2 3,187,648 - Rru_A2755 0.65 +0.0 3,187,944 - -1.1 3,188,021 + +0.3 3,188,039 + +0.0 3,188,048 - +0.3 3,188,063 - +0.5 3,188,069 - -0.2 3,188,154 + -0.0 3,188,155 - -0.8 3,188,163 + -0.4 3,188,163 + -1.5 3,188,163 + +0.2 3,188,163 + -0.1 3,188,164 - +0.2 3,188,164 - +0.1 3,188,164 - +0.5 3,188,164 - -1.3 3,188,184 - +0.8 3,188,237 + Rru_A2756 0.15 -0.7 3,188,474 + Rru_A2756 0.61 -0.6 3,188,476 + Rru_A2756 0.62 -1.1 3,188,476 + Rru_A2756 0.62 +0.4 3,188,477 - Rru_A2756 0.62 +0.2 3,188,547 + Rru_A2756 0.75 -0.5 3,188,547 + Rru_A2756 0.75 -2.6 3,188,547 + Rru_A2756 0.75 +0.4 3,188,937 - Rru_A2757 0.15 -1.6 3,189,016 + Rru_A2757 0.19 +1.1 3,189,016 + Rru_A2757 0.19 -0.6 3,189,017 - Rru_A2757 0.20 -0.2 3,189,161 + Rru_A2757 0.28 +0.6 3,189,514 + Rru_A2757 0.48 +0.1 3,189,514 + Rru_A2757 0.48 +0.5 3,189,514 + Rru_A2757 0.48 +0.4 3,189,514 + Rru_A2757 0.48 +0.0 3,189,515 - Rru_A2757 0.48 -0.7
Or see this region's nucleotide sequence