Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2151 and Rru_A2152 are separated by 3 nucleotides Rru_A2152 and Rru_A2153 are separated by 389 nucleotides Rru_A2153 and Rru_A2154 overlap by 4 nucleotides Rru_A2154 and Rru_A2155 overlap by 1 nucleotides
Rru_A2151: Rru_A2151 - Ribosomal protein S9 (NCBI), at 2,500,053 to 2,500,529
_A2151
Rru_A2152: Rru_A2152 - Ribosomal protein L13 (NCBI), at 2,500,533 to 2,500,997
_A2152
Rru_A2153: Rru_A2153 - TonB-like (NCBI), at 2,501,387 to 2,502,217
_A2153
Rru_A2154: Rru_A2154 - Biopolymer transport protein ExbD/TolR (NCBI), at 2,502,214 to 2,502,681
_A2154
Rru_A2155: Rru_A2155 - MotA/TolQ/ExbB proton channel (NCBI), at 2,502,681 to 2,503,571
_A2155
Position (kb)
2501
2502
2503 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2501.358 kb on + strand at 2501.358 kb on + strand at 2501.358 kb on + strand at 2501.399 kb on - strand at 2501.399 kb on - strand at 2501.399 kb on - strand at 2501.399 kb on - strand at 2501.399 kb on - strand at 2501.439 kb on + strand at 2501.620 kb on - strand, within Rru_A2153 at 2501.626 kb on + strand, within Rru_A2153 at 2501.626 kb on + strand, within Rru_A2153 at 2501.627 kb on - strand, within Rru_A2153 at 2501.627 kb on - strand, within Rru_A2153 at 2501.661 kb on + strand, within Rru_A2153 at 2501.661 kb on + strand, within Rru_A2153 at 2501.661 kb on + strand, within Rru_A2153 at 2501.661 kb on + strand, within Rru_A2153 at 2501.662 kb on - strand, within Rru_A2153 at 2501.849 kb on - strand, within Rru_A2153 at 2502.338 kb on + strand, within Rru_A2154 at 2502.365 kb on + strand, within Rru_A2154 at 2502.365 kb on + strand, within Rru_A2154 at 2502.365 kb on + strand, within Rru_A2154 at 2502.366 kb on - strand, within Rru_A2154 at 2502.366 kb on - strand, within Rru_A2154 at 2503.090 kb on + strand, within Rru_A2155 at 2503.090 kb on + strand, within Rru_A2155 at 2503.090 kb on + strand, within Rru_A2155 at 2503.090 kb on + strand, within Rru_A2155 at 2503.091 kb on - strand, within Rru_A2155 at 2503.091 kb on - strand, within Rru_A2155 at 2503.091 kb on - strand, within Rru_A2155
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 2,501,358 + -0.4 2,501,358 + +0.1 2,501,358 + +0.3 2,501,399 - -2.8 2,501,399 - -2.2 2,501,399 - -0.1 2,501,399 - +0.4 2,501,399 - +0.2 2,501,439 + -0.2 2,501,620 - Rru_A2153 0.28 +0.5 2,501,626 + Rru_A2153 0.29 -0.6 2,501,626 + Rru_A2153 0.29 +1.2 2,501,627 - Rru_A2153 0.29 +0.6 2,501,627 - Rru_A2153 0.29 +0.4 2,501,661 + Rru_A2153 0.33 -2.7 2,501,661 + Rru_A2153 0.33 +0.6 2,501,661 + Rru_A2153 0.33 +0.4 2,501,661 + Rru_A2153 0.33 -0.5 2,501,662 - Rru_A2153 0.33 +0.9 2,501,849 - Rru_A2153 0.56 +0.4 2,502,338 + Rru_A2154 0.26 -1.2 2,502,365 + Rru_A2154 0.32 +0.7 2,502,365 + Rru_A2154 0.32 +0.6 2,502,365 + Rru_A2154 0.32 -1.2 2,502,366 - Rru_A2154 0.32 +2.5 2,502,366 - Rru_A2154 0.32 -3.1 2,503,090 + Rru_A2155 0.46 +0.1 2,503,090 + Rru_A2155 0.46 -0.3 2,503,090 + Rru_A2155 0.46 -1.1 2,503,090 + Rru_A2155 0.46 +0.7 2,503,091 - Rru_A2155 0.46 +0.6 2,503,091 - Rru_A2155 0.46 +0.2 2,503,091 - Rru_A2155 0.46 +0.1
Or see this region's nucleotide sequence