Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1734

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1733 and Rru_A1734 are separated by 32 nucleotidesRru_A1734 and Rru_A1735 are separated by 168 nucleotides Rru_A1733: Rru_A1733 - hypothetical protein (NCBI), at 2,027,225 to 2,028,361 _A1733 Rru_A1734: Rru_A1734 - hypothetical protein (NCBI), at 2,028,394 to 2,028,663 _A1734 Rru_A1735: Rru_A1735 - hypothetical protein (NCBI), at 2,028,832 to 2,029,596 _A1735 Position (kb) 2028 2029Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2027.526 kb on + strand, within Rru_A1733at 2027.526 kb on + strand, within Rru_A1733at 2027.526 kb on + strand, within Rru_A1733at 2027.526 kb on + strand, within Rru_A1733at 2027.526 kb on + strand, within Rru_A1733at 2027.526 kb on + strand, within Rru_A1733at 2027.527 kb on - strand, within Rru_A1733at 2027.527 kb on - strand, within Rru_A1733at 2027.527 kb on - strand, within Rru_A1733at 2027.527 kb on - strand, within Rru_A1733at 2027.709 kb on + strand, within Rru_A1733at 2027.709 kb on + strand, within Rru_A1733at 2027.709 kb on + strand, within Rru_A1733at 2027.709 kb on + strand, within Rru_A1733at 2027.709 kb on + strand, within Rru_A1733at 2027.710 kb on - strand, within Rru_A1733at 2027.710 kb on - strand, within Rru_A1733at 2027.772 kb on + strand, within Rru_A1733at 2027.772 kb on + strand, within Rru_A1733at 2027.772 kb on + strand, within Rru_A1733at 2027.772 kb on + strand, within Rru_A1733at 2027.772 kb on + strand, within Rru_A1733at 2027.772 kb on + strand, within Rru_A1733at 2027.772 kb on + strand, within Rru_A1733at 2027.791 kb on - strand, within Rru_A1733at 2027.842 kb on + strand, within Rru_A1733at 2027.917 kb on - strand, within Rru_A1733at 2027.917 kb on - strand, within Rru_A1733at 2028.041 kb on + strand, within Rru_A1733at 2028.041 kb on + strand, within Rru_A1733at 2028.042 kb on - strand, within Rru_A1733at 2028.042 kb on - strand, within Rru_A1733at 2028.396 kb on - strandat 2028.553 kb on + strand, within Rru_A1734at 2028.553 kb on + strand, within Rru_A1734at 2028.553 kb on + strand, within Rru_A1734at 2028.554 kb on - strand, within Rru_A1734at 2028.554 kb on - strand, within Rru_A1734at 2028.563 kb on + strand, within Rru_A1734at 2028.563 kb on + strand, within Rru_A1734at 2028.563 kb on + strand, within Rru_A1734at 2028.563 kb on + strand, within Rru_A1734at 2028.563 kb on + strand, within Rru_A1734at 2028.564 kb on - strand, within Rru_A1734at 2028.564 kb on - strand, within Rru_A1734at 2028.564 kb on - strand, within Rru_A1734at 2028.663 kb on + strandat 2028.663 kb on + strandat 2028.664 kb on - strandat 2028.664 kb on - strandat 2028.774 kb on + strandat 2028.774 kb on + strandat 2028.774 kb on + strandat 2028.774 kb on + strandat 2028.774 kb on + strandat 2028.775 kb on - strandat 2028.775 kb on - strandat 2028.775 kb on - strandat 2028.775 kb on - strandat 2028.801 kb on + strandat 2029.044 kb on + strand, within Rru_A1735at 2029.589 kb on - strandat 2029.648 kb on - strandat 2029.648 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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2,027,526 + Rru_A1733 0.26 -0.3
2,027,526 + Rru_A1733 0.26 +0.1
2,027,526 + Rru_A1733 0.26 +0.3
2,027,526 + Rru_A1733 0.26 -0.5
2,027,526 + Rru_A1733 0.26 -0.2
2,027,526 + Rru_A1733 0.26 -3.7
2,027,527 - Rru_A1733 0.27 +1.0
2,027,527 - Rru_A1733 0.27 -0.1
2,027,527 - Rru_A1733 0.27 -2.2
2,027,527 - Rru_A1733 0.27 -3.6
2,027,709 + Rru_A1733 0.43 -0.1
2,027,709 + Rru_A1733 0.43 -0.5
2,027,709 + Rru_A1733 0.43 -0.3
2,027,709 + Rru_A1733 0.43 +0.7
2,027,709 + Rru_A1733 0.43 -0.6
2,027,710 - Rru_A1733 0.43 -2.5
2,027,710 - Rru_A1733 0.43 -2.1
2,027,772 + Rru_A1733 0.48 -2.3
2,027,772 + Rru_A1733 0.48 -0.5
2,027,772 + Rru_A1733 0.48 -0.2
2,027,772 + Rru_A1733 0.48 -0.4
2,027,772 + Rru_A1733 0.48 -2.5
2,027,772 + Rru_A1733 0.48 +1.0
2,027,772 + Rru_A1733 0.48 -1.6
2,027,791 - Rru_A1733 0.50 -4.4
2,027,842 + Rru_A1733 0.54 +0.0
2,027,917 - Rru_A1733 0.61 -1.3
2,027,917 - Rru_A1733 0.61 +0.5
2,028,041 + Rru_A1733 0.72 -3.4
2,028,041 + Rru_A1733 0.72 +0.3
2,028,042 - Rru_A1733 0.72 +0.3
2,028,042 - Rru_A1733 0.72 -0.1
2,028,396 - +0.2
2,028,553 + Rru_A1734 0.59 +1.3
2,028,553 + Rru_A1734 0.59 -0.0
2,028,553 + Rru_A1734 0.59 -1.6
2,028,554 - Rru_A1734 0.59 -0.7
2,028,554 - Rru_A1734 0.59 -0.7
2,028,563 + Rru_A1734 0.63 -1.9
2,028,563 + Rru_A1734 0.63 -2.0
2,028,563 + Rru_A1734 0.63 +0.4
2,028,563 + Rru_A1734 0.63 -4.1
2,028,563 + Rru_A1734 0.63 -4.5
2,028,564 - Rru_A1734 0.63 -0.3
2,028,564 - Rru_A1734 0.63 -3.3
2,028,564 - Rru_A1734 0.63 -2.2
2,028,663 + +0.7
2,028,663 + -0.7
2,028,664 - +0.4
2,028,664 - -0.3
2,028,774 + -1.1
2,028,774 + +0.1
2,028,774 + +0.1
2,028,774 + -3.1
2,028,774 + -2.4
2,028,775 - -0.7
2,028,775 - +1.1
2,028,775 - -0.5
2,028,775 - -0.6
2,028,801 + +0.9
2,029,044 + Rru_A1735 0.28 -0.7
2,029,589 - -2.2
2,029,648 - +1.0
2,029,648 - -3.0

Or see this region's nucleotide sequence