Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1733 and Rru_A1734 are separated by 32 nucleotides Rru_A1734 and Rru_A1735 are separated by 168 nucleotides
Rru_A1733: Rru_A1733 - hypothetical protein (NCBI), at 2,027,225 to 2,028,361
_A1733
Rru_A1734: Rru_A1734 - hypothetical protein (NCBI), at 2,028,394 to 2,028,663
_A1734
Rru_A1735: Rru_A1735 - hypothetical protein (NCBI), at 2,028,832 to 2,029,596
_A1735
Position (kb)
2028
2029 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2027.526 kb on + strand, within Rru_A1733 at 2027.526 kb on + strand, within Rru_A1733 at 2027.526 kb on + strand, within Rru_A1733 at 2027.526 kb on + strand, within Rru_A1733 at 2027.526 kb on + strand, within Rru_A1733 at 2027.526 kb on + strand, within Rru_A1733 at 2027.527 kb on - strand, within Rru_A1733 at 2027.527 kb on - strand, within Rru_A1733 at 2027.527 kb on - strand, within Rru_A1733 at 2027.527 kb on - strand, within Rru_A1733 at 2027.709 kb on + strand, within Rru_A1733 at 2027.709 kb on + strand, within Rru_A1733 at 2027.709 kb on + strand, within Rru_A1733 at 2027.709 kb on + strand, within Rru_A1733 at 2027.709 kb on + strand, within Rru_A1733 at 2027.710 kb on - strand, within Rru_A1733 at 2027.710 kb on - strand, within Rru_A1733 at 2027.772 kb on + strand, within Rru_A1733 at 2027.772 kb on + strand, within Rru_A1733 at 2027.772 kb on + strand, within Rru_A1733 at 2027.772 kb on + strand, within Rru_A1733 at 2027.772 kb on + strand, within Rru_A1733 at 2027.772 kb on + strand, within Rru_A1733 at 2027.772 kb on + strand, within Rru_A1733 at 2027.791 kb on - strand, within Rru_A1733 at 2027.842 kb on + strand, within Rru_A1733 at 2027.917 kb on - strand, within Rru_A1733 at 2027.917 kb on - strand, within Rru_A1733 at 2028.041 kb on + strand, within Rru_A1733 at 2028.041 kb on + strand, within Rru_A1733 at 2028.042 kb on - strand, within Rru_A1733 at 2028.042 kb on - strand, within Rru_A1733 at 2028.396 kb on - strand at 2028.553 kb on + strand, within Rru_A1734 at 2028.553 kb on + strand, within Rru_A1734 at 2028.553 kb on + strand, within Rru_A1734 at 2028.554 kb on - strand, within Rru_A1734 at 2028.554 kb on - strand, within Rru_A1734 at 2028.563 kb on + strand, within Rru_A1734 at 2028.563 kb on + strand, within Rru_A1734 at 2028.563 kb on + strand, within Rru_A1734 at 2028.563 kb on + strand, within Rru_A1734 at 2028.563 kb on + strand, within Rru_A1734 at 2028.564 kb on - strand, within Rru_A1734 at 2028.564 kb on - strand, within Rru_A1734 at 2028.564 kb on - strand, within Rru_A1734 at 2028.663 kb on + strand at 2028.663 kb on + strand at 2028.664 kb on - strand at 2028.664 kb on - strand at 2028.774 kb on + strand at 2028.774 kb on + strand at 2028.774 kb on + strand at 2028.774 kb on + strand at 2028.774 kb on + strand at 2028.775 kb on - strand at 2028.775 kb on - strand at 2028.775 kb on - strand at 2028.775 kb on - strand at 2028.801 kb on + strand at 2029.044 kb on + strand, within Rru_A1735 at 2029.589 kb on - strand at 2029.648 kb on - strand at 2029.648 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 2,027,526 + Rru_A1733 0.26 -0.3 2,027,526 + Rru_A1733 0.26 +0.1 2,027,526 + Rru_A1733 0.26 +0.3 2,027,526 + Rru_A1733 0.26 -0.5 2,027,526 + Rru_A1733 0.26 -0.2 2,027,526 + Rru_A1733 0.26 -3.7 2,027,527 - Rru_A1733 0.27 +1.0 2,027,527 - Rru_A1733 0.27 -0.1 2,027,527 - Rru_A1733 0.27 -2.2 2,027,527 - Rru_A1733 0.27 -3.6 2,027,709 + Rru_A1733 0.43 -0.1 2,027,709 + Rru_A1733 0.43 -0.5 2,027,709 + Rru_A1733 0.43 -0.3 2,027,709 + Rru_A1733 0.43 +0.7 2,027,709 + Rru_A1733 0.43 -0.6 2,027,710 - Rru_A1733 0.43 -2.5 2,027,710 - Rru_A1733 0.43 -2.1 2,027,772 + Rru_A1733 0.48 -2.3 2,027,772 + Rru_A1733 0.48 -0.5 2,027,772 + Rru_A1733 0.48 -0.2 2,027,772 + Rru_A1733 0.48 -0.4 2,027,772 + Rru_A1733 0.48 -2.5 2,027,772 + Rru_A1733 0.48 +1.0 2,027,772 + Rru_A1733 0.48 -1.6 2,027,791 - Rru_A1733 0.50 -4.4 2,027,842 + Rru_A1733 0.54 +0.0 2,027,917 - Rru_A1733 0.61 -1.3 2,027,917 - Rru_A1733 0.61 +0.5 2,028,041 + Rru_A1733 0.72 -3.4 2,028,041 + Rru_A1733 0.72 +0.3 2,028,042 - Rru_A1733 0.72 +0.3 2,028,042 - Rru_A1733 0.72 -0.1 2,028,396 - +0.2 2,028,553 + Rru_A1734 0.59 +1.3 2,028,553 + Rru_A1734 0.59 -0.0 2,028,553 + Rru_A1734 0.59 -1.6 2,028,554 - Rru_A1734 0.59 -0.7 2,028,554 - Rru_A1734 0.59 -0.7 2,028,563 + Rru_A1734 0.63 -1.9 2,028,563 + Rru_A1734 0.63 -2.0 2,028,563 + Rru_A1734 0.63 +0.4 2,028,563 + Rru_A1734 0.63 -4.1 2,028,563 + Rru_A1734 0.63 -4.5 2,028,564 - Rru_A1734 0.63 -0.3 2,028,564 - Rru_A1734 0.63 -3.3 2,028,564 - Rru_A1734 0.63 -2.2 2,028,663 + +0.7 2,028,663 + -0.7 2,028,664 - +0.4 2,028,664 - -0.3 2,028,774 + -1.1 2,028,774 + +0.1 2,028,774 + +0.1 2,028,774 + -3.1 2,028,774 + -2.4 2,028,775 - -0.7 2,028,775 - +1.1 2,028,775 - -0.5 2,028,775 - -0.6 2,028,801 + +0.9 2,029,044 + Rru_A1735 0.28 -0.7 2,029,589 - -2.2 2,029,648 - +1.0 2,029,648 - -3.0
Or see this region's nucleotide sequence