Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1678

Experiment: Succinic Acid 31.25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1677 and Rru_A1678 are separated by 98 nucleotidesRru_A1678 and Rru_A1679 are separated by 6 nucleotides Rru_A1677: Rru_A1677 - Signal transduction histidine kinase, nitrogen specific, NtrB (NCBI), at 1,966,637 to 1,967,737 _A1677 Rru_A1678: Rru_A1678 - Nitrogen Metabolism Transcriptional Regulator, NtrC, Fis Family (NCBI), at 1,967,836 to 1,969,281 _A1678 Rru_A1679: Rru_A1679 - Multi-sensor Signal Transduction Histidine Kinase (NCBI), at 1,969,288 to 1,971,570 _A1679 Position (kb) 1967 1968 1969 1970Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1966.898 kb on + strand, within Rru_A1677at 1967.345 kb on + strand, within Rru_A1677at 1967.345 kb on + strand, within Rru_A1677at 1967.345 kb on + strand, within Rru_A1677at 1967.345 kb on + strand, within Rru_A1677at 1967.346 kb on - strand, within Rru_A1677at 1967.346 kb on - strand, within Rru_A1677at 1967.346 kb on - strand, within Rru_A1677at 1967.346 kb on - strand, within Rru_A1677at 1967.346 kb on - strand, within Rru_A1677at 1967.472 kb on - strand, within Rru_A1677at 1967.472 kb on - strand, within Rru_A1677at 1967.490 kb on + strand, within Rru_A1677at 1967.490 kb on + strand, within Rru_A1677at 1967.551 kb on + strand, within Rru_A1677at 1967.551 kb on + strand, within Rru_A1677at 1967.561 kb on - strand, within Rru_A1677at 1968.225 kb on + strand, within Rru_A1678at 1968.283 kb on + strand, within Rru_A1678at 1968.283 kb on + strand, within Rru_A1678at 1968.283 kb on + strand, within Rru_A1678at 1968.283 kb on + strand, within Rru_A1678at 1968.383 kb on - strand, within Rru_A1678at 1968.613 kb on + strand, within Rru_A1678at 1968.614 kb on - strand, within Rru_A1678at 1968.693 kb on + strand, within Rru_A1678at 1968.727 kb on + strand, within Rru_A1678at 1969.072 kb on + strand, within Rru_A1678

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
remove
1,966,898 + Rru_A1677 0.24 -2.0
1,967,345 + Rru_A1677 0.64 -2.3
1,967,345 + Rru_A1677 0.64 +2.2
1,967,345 + Rru_A1677 0.64 -2.3
1,967,345 + Rru_A1677 0.64 -2.6
1,967,346 - Rru_A1677 0.64 -0.3
1,967,346 - Rru_A1677 0.64 -2.5
1,967,346 - Rru_A1677 0.64 +0.9
1,967,346 - Rru_A1677 0.64 -2.2
1,967,346 - Rru_A1677 0.64 -1.0
1,967,472 - Rru_A1677 0.76 -1.5
1,967,472 - Rru_A1677 0.76 -4.0
1,967,490 + Rru_A1677 0.77 -2.0
1,967,490 + Rru_A1677 0.77 -0.7
1,967,551 + Rru_A1677 0.83 -2.2
1,967,551 + Rru_A1677 0.83 -1.3
1,967,561 - Rru_A1677 0.84 -3.0
1,968,225 + Rru_A1678 0.27 -3.3
1,968,283 + Rru_A1678 0.31 -0.3
1,968,283 + Rru_A1678 0.31 -3.0
1,968,283 + Rru_A1678 0.31 -3.9
1,968,283 + Rru_A1678 0.31 +1.0
1,968,383 - Rru_A1678 0.38 -1.3
1,968,613 + Rru_A1678 0.54 -2.2
1,968,614 - Rru_A1678 0.54 +0.7
1,968,693 + Rru_A1678 0.59 -3.9
1,968,727 + Rru_A1678 0.62 -1.1
1,969,072 + Rru_A1678 0.85 -1.0

Or see this region's nucleotide sequence