Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1306

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1304 and Rru_A1305 are separated by 9 nucleotidesRru_A1305 and Rru_A1306 are separated by 19 nucleotidesRru_A1306 and Rru_A1307 overlap by 4 nucleotidesRru_A1307 and Rru_A1308 are separated by 108 nucleotides Rru_A1304: Rru_A1304 - Urocanate hydratase (NCBI), at 1,538,781 to 1,540,451 _A1304 Rru_A1305: Rru_A1305 - Predicted transcriptional regulator (NCBI), at 1,540,461 to 1,540,757 _A1305 Rru_A1306: Rru_A1306 - Short-chain dehydrogenase/reductase SDR (NCBI), at 1,540,777 to 1,541,610 _A1306 Rru_A1307: Rru_A1307 - Thioesterase superfamily (NCBI), at 1,541,607 to 1,542,119 _A1307 Rru_A1308: Rru_A1308 - Acyl-CoA dehydrogenase (NCBI), at 1,542,228 to 1,544,018 _A1308 Position (kb) 1540 1541 1542Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1539.825 kb on + strand, within Rru_A1304at 1539.826 kb on - strand, within Rru_A1304at 1539.826 kb on - strand, within Rru_A1304at 1539.826 kb on - strand, within Rru_A1304at 1539.826 kb on - strand, within Rru_A1304at 1539.826 kb on - strand, within Rru_A1304at 1539.896 kb on + strand, within Rru_A1304at 1539.896 kb on + strand, within Rru_A1304at 1539.896 kb on + strand, within Rru_A1304at 1539.897 kb on - strand, within Rru_A1304at 1539.897 kb on - strand, within Rru_A1304at 1539.897 kb on - strand, within Rru_A1304at 1539.897 kb on - strand, within Rru_A1304at 1539.897 kb on - strand, within Rru_A1304at 1539.897 kb on - strand, within Rru_A1304at 1539.900 kb on + strand, within Rru_A1304at 1539.900 kb on + strand, within Rru_A1304at 1539.900 kb on + strand, within Rru_A1304at 1539.900 kb on + strand, within Rru_A1304at 1539.901 kb on - strand, within Rru_A1304at 1539.980 kb on + strand, within Rru_A1304at 1539.980 kb on + strand, within Rru_A1304at 1540.081 kb on + strand, within Rru_A1304at 1540.450 kb on - strandat 1540.691 kb on - strand, within Rru_A1305at 1540.691 kb on - strand, within Rru_A1305at 1540.691 kb on - strand, within Rru_A1305at 1541.106 kb on + strand, within Rru_A1306at 1541.106 kb on + strand, within Rru_A1306at 1541.106 kb on + strand, within Rru_A1306at 1541.106 kb on + strand, within Rru_A1306at 1541.106 kb on + strand, within Rru_A1306at 1541.107 kb on - strand, within Rru_A1306at 1541.107 kb on - strand, within Rru_A1306at 1541.169 kb on + strand, within Rru_A1306at 1541.502 kb on + strand, within Rru_A1306at 1541.503 kb on - strand, within Rru_A1306at 1541.611 kb on - strandat 1541.708 kb on - strand, within Rru_A1307at 1542.029 kb on + strand, within Rru_A1307at 1542.029 kb on + strand, within Rru_A1307at 1542.030 kb on - strand, within Rru_A1307at 1542.030 kb on - strand, within Rru_A1307at 1542.030 kb on - strand, within Rru_A1307at 1542.030 kb on - strand, within Rru_A1307at 1542.213 kb on + strandat 1542.396 kb on + strandat 1542.422 kb on - strand, within Rru_A1308at 1542.435 kb on - strand, within Rru_A1308at 1542.455 kb on - strand, within Rru_A1308at 1542.601 kb on + strand, within Rru_A1308at 1542.601 kb on + strand, within Rru_A1308at 1542.601 kb on + strand, within Rru_A1308at 1542.601 kb on + strand, within Rru_A1308

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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1,539,825 + Rru_A1304 0.62 -1.3
1,539,826 - Rru_A1304 0.63 +0.1
1,539,826 - Rru_A1304 0.63 +1.3
1,539,826 - Rru_A1304 0.63 +0.1
1,539,826 - Rru_A1304 0.63 -1.4
1,539,826 - Rru_A1304 0.63 +0.8
1,539,896 + Rru_A1304 0.67 +0.2
1,539,896 + Rru_A1304 0.67 +0.0
1,539,896 + Rru_A1304 0.67 +0.3
1,539,897 - Rru_A1304 0.67 +3.5
1,539,897 - Rru_A1304 0.67 -0.4
1,539,897 - Rru_A1304 0.67 -0.4
1,539,897 - Rru_A1304 0.67 +0.3
1,539,897 - Rru_A1304 0.67 -0.1
1,539,897 - Rru_A1304 0.67 +0.4
1,539,900 + Rru_A1304 0.67 -0.3
1,539,900 + Rru_A1304 0.67 +0.1
1,539,900 + Rru_A1304 0.67 +1.2
1,539,900 + Rru_A1304 0.67 -3.0
1,539,901 - Rru_A1304 0.67 -0.4
1,539,980 + Rru_A1304 0.72 +0.4
1,539,980 + Rru_A1304 0.72 -0.2
1,540,081 + Rru_A1304 0.78 -1.1
1,540,450 - +0.2
1,540,691 - Rru_A1305 0.77 -3.1
1,540,691 - Rru_A1305 0.77 +0.8
1,540,691 - Rru_A1305 0.77 +0.7
1,541,106 + Rru_A1306 0.39 -3.6
1,541,106 + Rru_A1306 0.39 -0.3
1,541,106 + Rru_A1306 0.39 -0.1
1,541,106 + Rru_A1306 0.39 +0.5
1,541,106 + Rru_A1306 0.39 -0.7
1,541,107 - Rru_A1306 0.40 -1.1
1,541,107 - Rru_A1306 0.40 +0.0
1,541,169 + Rru_A1306 0.47 -2.2
1,541,502 + Rru_A1306 0.87 -0.1
1,541,503 - Rru_A1306 0.87 -3.4
1,541,611 - +0.1
1,541,708 - Rru_A1307 0.20 -0.5
1,542,029 + Rru_A1307 0.82 +0.3
1,542,029 + Rru_A1307 0.82 -1.0
1,542,030 - Rru_A1307 0.82 -0.1
1,542,030 - Rru_A1307 0.82 +0.3
1,542,030 - Rru_A1307 0.82 -0.3
1,542,030 - Rru_A1307 0.82 -4.3
1,542,213 + -2.6
1,542,396 + -3.6
1,542,422 - Rru_A1308 0.11 +0.4
1,542,435 - Rru_A1308 0.12 -0.3
1,542,455 - Rru_A1308 0.13 +0.0
1,542,601 + Rru_A1308 0.21 -0.4
1,542,601 + Rru_A1308 0.21 +1.1
1,542,601 + Rru_A1308 0.21 +0.3
1,542,601 + Rru_A1308 0.21 +0.3

Or see this region's nucleotide sequence