Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1264 and Rru_A1265 are separated by 193 nucleotides Rru_A1265 and Rru_A1266 are separated by 51 nucleotides Rru_A1266 and Rru_A1267 are separated by 58 nucleotides
Rru_A1264: Rru_A1264 - Short-chain dehydrogenase/reductase SDR (NCBI), at 1,485,291 to 1,486,073
_A1264
Rru_A1265: Rru_A1265 - Transcriptional Regulator, DeoR family (NCBI), at 1,486,267 to 1,487,124
_A1265
Rru_A1266: Rru_A1266 - Photosystem I assembly BtpA (NCBI), at 1,487,176 to 1,487,979
_A1266
Rru_A1267: Rru_A1267 - Carbohydrate kinase, FGGY (NCBI), at 1,488,038 to 1,489,543
_A1267
Position (kb)
1486
1487
1488 Strain fitness (log2 ratio)
-2
-1
0
1 at 1485.292 kb on + strand at 1485.293 kb on - strand at 1485.427 kb on + strand, within Rru_A1264 at 1485.427 kb on + strand, within Rru_A1264 at 1485.428 kb on - strand, within Rru_A1264 at 1485.428 kb on - strand, within Rru_A1264 at 1485.428 kb on - strand, within Rru_A1264 at 1485.428 kb on - strand, within Rru_A1264 at 1485.607 kb on + strand, within Rru_A1264 at 1485.985 kb on + strand, within Rru_A1264 at 1485.986 kb on - strand, within Rru_A1264 at 1486.606 kb on + strand, within Rru_A1265 at 1486.748 kb on - strand, within Rru_A1265 at 1486.882 kb on + strand, within Rru_A1265 at 1487.004 kb on + strand, within Rru_A1265
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 1,485,292 + -0.3 1,485,293 - -0.3 1,485,427 + Rru_A1264 0.17 -2.2 1,485,427 + Rru_A1264 0.17 -0.9 1,485,428 - Rru_A1264 0.17 -0.3 1,485,428 - Rru_A1264 0.17 +0.2 1,485,428 - Rru_A1264 0.17 -1.3 1,485,428 - Rru_A1264 0.17 +0.3 1,485,607 + Rru_A1264 0.40 -1.8 1,485,985 + Rru_A1264 0.89 +0.3 1,485,986 - Rru_A1264 0.89 +0.0 1,486,606 + Rru_A1265 0.40 -1.0 1,486,748 - Rru_A1265 0.56 -2.7 1,486,882 + Rru_A1265 0.72 -0.1 1,487,004 + Rru_A1265 0.86 -1.1
Or see this region's nucleotide sequence