Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1165 and Rru_A1166 are separated by 16 nucleotides Rru_A1166 and Rru_A1167 overlap by 4 nucleotides Rru_A1167 and Rru_A1168 overlap by 8 nucleotides Rru_A1168 and Rru_A1169 overlap by 1 nucleotides
Rru_A1165: Rru_A1165 - Hydrogenase expression/formation protein (HUPF/HYPC) (NCBI), at 1,382,694 to 1,383,065
_A1165
Rru_A1166: Rru_A1166 - hydrogenase expression/formation protein hupH (NCBI), at 1,383,082 to 1,383,858
_A1166
Rru_A1167: Rru_A1167 - putative hydrogenase expression/formation protein HupK (NCBI), at 1,383,855 to 1,385,075
_A1167
Rru_A1168: Rru_A1168 - Hydrogenase expression/synthesis, HypA (NCBI), at 1,385,068 to 1,385,409
_A1168
Rru_A1169: Rru_A1169 - Hydrogenase accessory protein HypB (NCBI), at 1,385,409 to 1,386,215
_A1169
Position (kb)
1383
1384
1385
1386 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1383.165 kb on + strand, within Rru_A1166 at 1383.165 kb on + strand, within Rru_A1166 at 1383.166 kb on - strand, within Rru_A1166 at 1383.166 kb on - strand, within Rru_A1166 at 1383.166 kb on - strand, within Rru_A1166 at 1383.166 kb on - strand, within Rru_A1166 at 1383.166 kb on - strand, within Rru_A1166 at 1383.359 kb on + strand, within Rru_A1166 at 1383.360 kb on - strand, within Rru_A1166 at 1383.828 kb on - strand at 1384.745 kb on + strand, within Rru_A1167 at 1384.746 kb on - strand, within Rru_A1167 at 1385.350 kb on + strand, within Rru_A1168 at 1385.350 kb on + strand, within Rru_A1168 at 1385.351 kb on - strand, within Rru_A1168 at 1385.414 kb on + strand at 1385.414 kb on + strand at 1385.414 kb on + strand at 1385.415 kb on - strand at 1385.604 kb on - strand, within Rru_A1169 at 1385.681 kb on - strand, within Rru_A1169 at 1385.855 kb on + strand, within Rru_A1169 at 1385.855 kb on + strand, within Rru_A1169 at 1385.946 kb on - strand, within Rru_A1169 at 1385.946 kb on - strand, within Rru_A1169 at 1385.946 kb on - strand, within Rru_A1169 at 1385.994 kb on + strand, within Rru_A1169 at 1385.994 kb on + strand, within Rru_A1169 at 1386.055 kb on - strand, within Rru_A1169
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 1,383,165 + Rru_A1166 0.11 +0.1 1,383,165 + Rru_A1166 0.11 -0.6 1,383,166 - Rru_A1166 0.11 +1.6 1,383,166 - Rru_A1166 0.11 +0.4 1,383,166 - Rru_A1166 0.11 -0.0 1,383,166 - Rru_A1166 0.11 +0.8 1,383,166 - Rru_A1166 0.11 +0.7 1,383,359 + Rru_A1166 0.36 +0.4 1,383,360 - Rru_A1166 0.36 -1.1 1,383,828 - -0.4 1,384,745 + Rru_A1167 0.73 -3.6 1,384,746 - Rru_A1167 0.73 -0.3 1,385,350 + Rru_A1168 0.82 -1.3 1,385,350 + Rru_A1168 0.82 -0.7 1,385,351 - Rru_A1168 0.83 +0.3 1,385,414 + -0.7 1,385,414 + -0.5 1,385,414 + -2.6 1,385,415 - +0.8 1,385,604 - Rru_A1169 0.24 -2.8 1,385,681 - Rru_A1169 0.34 +0.6 1,385,855 + Rru_A1169 0.55 +1.7 1,385,855 + Rru_A1169 0.55 +0.0 1,385,946 - Rru_A1169 0.67 -2.4 1,385,946 - Rru_A1169 0.67 -3.2 1,385,946 - Rru_A1169 0.67 +0.3 1,385,994 + Rru_A1169 0.72 +0.1 1,385,994 + Rru_A1169 0.72 -2.3 1,386,055 - Rru_A1169 0.80 -0.3
Or see this region's nucleotide sequence