Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0891

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0890 and Rru_A0891 are separated by 139 nucleotidesRru_A0891 and Rru_A0892 are separated by 32 nucleotides Rru_A0890: Rru_A0890 - Integral membrane protein TerC (NCBI), at 1,066,674 to 1,067,690 _A0890 Rru_A0891: Rru_A0891 - Tellurite resistance TerB (NCBI), at 1,067,830 to 1,068,282 _A0891 Rru_A0892: Rru_A0892 - stress protein (NCBI), at 1,068,315 to 1,069,571 _A0892 Position (kb) 1067 1068 1069Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1066.877 kb on - strand, within Rru_A0890at 1066.903 kb on + strand, within Rru_A0890at 1066.904 kb on - strand, within Rru_A0890at 1067.206 kb on + strand, within Rru_A0890at 1067.282 kb on + strand, within Rru_A0890at 1067.379 kb on - strand, within Rru_A0890at 1067.379 kb on - strand, within Rru_A0890at 1067.442 kb on - strand, within Rru_A0890at 1067.482 kb on + strand, within Rru_A0890at 1067.483 kb on - strand, within Rru_A0890at 1067.711 kb on + strandat 1067.712 kb on - strandat 1067.732 kb on - strandat 1067.748 kb on - strandat 1067.949 kb on + strand, within Rru_A0891at 1068.296 kb on - strandat 1068.352 kb on + strandat 1068.352 kb on + strandat 1068.352 kb on + strandat 1068.353 kb on - strandat 1068.353 kb on - strandat 1068.386 kb on - strandat 1068.386 kb on - strandat 1068.556 kb on + strand, within Rru_A0892at 1068.557 kb on - strand, within Rru_A0892at 1068.557 kb on - strand, within Rru_A0892at 1068.557 kb on - strand, within Rru_A0892at 1068.557 kb on - strand, within Rru_A0892at 1068.557 kb on - strand, within Rru_A0892at 1068.686 kb on - strand, within Rru_A0892at 1068.686 kb on - strand, within Rru_A0892at 1069.031 kb on - strand, within Rru_A0892

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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1,066,877 - Rru_A0890 0.20 -1.1
1,066,903 + Rru_A0890 0.23 -2.5
1,066,904 - Rru_A0890 0.23 +1.2
1,067,206 + Rru_A0890 0.52 -2.6
1,067,282 + Rru_A0890 0.60 -3.4
1,067,379 - Rru_A0890 0.69 -0.7
1,067,379 - Rru_A0890 0.69 +0.6
1,067,442 - Rru_A0890 0.76 -0.3
1,067,482 + Rru_A0890 0.79 +0.2
1,067,483 - Rru_A0890 0.80 -0.3
1,067,711 + -0.1
1,067,712 - -0.4
1,067,732 - +0.1
1,067,748 - +0.1
1,067,949 + Rru_A0891 0.26 +0.1
1,068,296 - -1.0
1,068,352 + -1.1
1,068,352 + +0.3
1,068,352 + -0.2
1,068,353 - +0.8
1,068,353 - +0.0
1,068,386 - +0.3
1,068,386 - +0.6
1,068,556 + Rru_A0892 0.19 +1.2
1,068,557 - Rru_A0892 0.19 -1.9
1,068,557 - Rru_A0892 0.19 -0.5
1,068,557 - Rru_A0892 0.19 +2.1
1,068,557 - Rru_A0892 0.19 +0.9
1,068,557 - Rru_A0892 0.19 -0.3
1,068,686 - Rru_A0892 0.30 +0.1
1,068,686 - Rru_A0892 0.30 -0.2
1,069,031 - Rru_A0892 0.57 +0.4

Or see this region's nucleotide sequence