Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0795

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0794 and Rru_A0795 are separated by 12 nucleotidesRru_A0795 and Rru_A0796 are separated by 39 nucleotides Rru_A0794: Rru_A0794 - Nitrogenase (NCBI), at 947,854 to 949,389 _A0794 Rru_A0795: Rru_A0795 - Nitrogenase iron protein (NCBI), at 949,402 to 950,277 _A0795 Rru_A0796: Rru_A0796 - Radical SAM (NCBI), at 950,317 to 951,312 _A0796 Position (kb) 949 950 951Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 948.428 kb on + strand, within Rru_A0794at 948.428 kb on + strand, within Rru_A0794at 948.429 kb on - strand, within Rru_A0794at 948.429 kb on - strand, within Rru_A0794at 948.429 kb on - strand, within Rru_A0794at 948.503 kb on + strand, within Rru_A0794at 948.563 kb on + strand, within Rru_A0794at 948.563 kb on + strand, within Rru_A0794at 948.564 kb on - strand, within Rru_A0794at 948.564 kb on - strand, within Rru_A0794at 948.579 kb on - strand, within Rru_A0794at 948.650 kb on + strand, within Rru_A0794at 948.650 kb on + strand, within Rru_A0794at 948.651 kb on - strand, within Rru_A0794at 948.651 kb on - strand, within Rru_A0794at 948.841 kb on + strand, within Rru_A0794at 948.842 kb on - strand, within Rru_A0794at 949.001 kb on + strand, within Rru_A0794at 949.001 kb on + strand, within Rru_A0794at 949.095 kb on + strand, within Rru_A0794at 949.095 kb on + strand, within Rru_A0794at 949.096 kb on - strand, within Rru_A0794at 949.096 kb on - strand, within Rru_A0794at 949.096 kb on - strand, within Rru_A0794at 949.096 kb on - strand, within Rru_A0794at 949.096 kb on - strand, within Rru_A0794at 949.097 kb on + strand, within Rru_A0794at 949.097 kb on + strand, within Rru_A0794at 949.098 kb on - strand, within Rru_A0794at 949.098 kb on - strand, within Rru_A0794at 949.525 kb on - strand, within Rru_A0795at 949.525 kb on - strand, within Rru_A0795at 949.525 kb on - strand, within Rru_A0795at 949.556 kb on + strand, within Rru_A0795at 949.557 kb on - strand, within Rru_A0795at 949.557 kb on - strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.763 kb on + strand, within Rru_A0795at 949.763 kb on + strand, within Rru_A0795at 949.763 kb on + strand, within Rru_A0795at 949.764 kb on - strand, within Rru_A0795at 949.799 kb on + strand, within Rru_A0795at 949.800 kb on - strand, within Rru_A0795at 949.913 kb on + strand, within Rru_A0795at 949.913 kb on + strand, within Rru_A0795at 949.914 kb on - strand, within Rru_A0795at 949.914 kb on - strand, within Rru_A0795at 949.914 kb on - strand, within Rru_A0795at 950.027 kb on + strand, within Rru_A0795at 950.027 kb on + strand, within Rru_A0795at 950.027 kb on + strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.112 kb on - strand, within Rru_A0795at 950.112 kb on - strand, within Rru_A0795at 950.178 kb on - strand, within Rru_A0795at 950.178 kb on - strand, within Rru_A0795at 950.205 kb on + strandat 950.206 kb on - strandat 950.246 kb on + strandat 950.246 kb on + strandat 950.357 kb on + strandat 950.428 kb on - strand, within Rru_A0796at 950.509 kb on - strand, within Rru_A0796

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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948,428 + Rru_A0794 0.37 +0.6
948,428 + Rru_A0794 0.37 -0.4
948,429 - Rru_A0794 0.37 -0.8
948,429 - Rru_A0794 0.37 -0.5
948,429 - Rru_A0794 0.37 +0.3
948,503 + Rru_A0794 0.42 -0.2
948,563 + Rru_A0794 0.46 +0.8
948,563 + Rru_A0794 0.46 +0.3
948,564 - Rru_A0794 0.46 -1.8
948,564 - Rru_A0794 0.46 +1.3
948,579 - Rru_A0794 0.47 -0.2
948,650 + Rru_A0794 0.52 +0.1
948,650 + Rru_A0794 0.52 +0.2
948,651 - Rru_A0794 0.52 +0.2
948,651 - Rru_A0794 0.52 -0.2
948,841 + Rru_A0794 0.64 -1.4
948,842 - Rru_A0794 0.64 -0.1
949,001 + Rru_A0794 0.75 -0.3
949,001 + Rru_A0794 0.75 +1.0
949,095 + Rru_A0794 0.81 -0.1
949,095 + Rru_A0794 0.81 +0.5
949,096 - Rru_A0794 0.81 +0.6
949,096 - Rru_A0794 0.81 -0.7
949,096 - Rru_A0794 0.81 +0.9
949,096 - Rru_A0794 0.81 -2.2
949,096 - Rru_A0794 0.81 +2.3
949,097 + Rru_A0794 0.81 +1.3
949,097 + Rru_A0794 0.81 +0.6
949,098 - Rru_A0794 0.81 +0.8
949,098 - Rru_A0794 0.81 +0.8
949,525 - Rru_A0795 0.14 +0.3
949,525 - Rru_A0795 0.14 -0.6
949,525 - Rru_A0795 0.14 +2.0
949,556 + Rru_A0795 0.18 +1.8
949,557 - Rru_A0795 0.18 +0.5
949,557 - Rru_A0795 0.18 -0.5
949,646 + Rru_A0795 0.28 -0.3
949,646 + Rru_A0795 0.28 -0.4
949,646 + Rru_A0795 0.28 +0.1
949,646 + Rru_A0795 0.28 +0.5
949,646 + Rru_A0795 0.28 -0.9
949,646 + Rru_A0795 0.28 -0.0
949,763 + Rru_A0795 0.41 +0.1
949,763 + Rru_A0795 0.41 +0.3
949,763 + Rru_A0795 0.41 -0.7
949,764 - Rru_A0795 0.41 +0.1
949,799 + Rru_A0795 0.45 -2.5
949,800 - Rru_A0795 0.45 -2.9
949,913 + Rru_A0795 0.58 -0.3
949,913 + Rru_A0795 0.58 +0.0
949,914 - Rru_A0795 0.58 -0.0
949,914 - Rru_A0795 0.58 +1.8
949,914 - Rru_A0795 0.58 -0.0
950,027 + Rru_A0795 0.71 -2.7
950,027 + Rru_A0795 0.71 -0.5
950,027 + Rru_A0795 0.71 -1.7
950,028 - Rru_A0795 0.71 +0.5
950,028 - Rru_A0795 0.71 +0.9
950,028 - Rru_A0795 0.71 +0.4
950,028 - Rru_A0795 0.71 -0.6
950,028 - Rru_A0795 0.71 -0.9
950,028 - Rru_A0795 0.71 -0.5
950,028 - Rru_A0795 0.71 -4.0
950,028 - Rru_A0795 0.71 -0.6
950,028 - Rru_A0795 0.71 -1.6
950,028 - Rru_A0795 0.71 -1.1
950,111 + Rru_A0795 0.81 -3.0
950,111 + Rru_A0795 0.81 +0.4
950,111 + Rru_A0795 0.81 +0.7
950,111 + Rru_A0795 0.81 +0.4
950,111 + Rru_A0795 0.81 +0.3
950,111 + Rru_A0795 0.81 +0.2
950,112 - Rru_A0795 0.81 -1.6
950,112 - Rru_A0795 0.81 +1.4
950,178 - Rru_A0795 0.89 -0.8
950,178 - Rru_A0795 0.89 -3.8
950,205 + +0.3
950,206 - -0.0
950,246 + +0.4
950,246 + +0.7
950,357 + -0.9
950,428 - Rru_A0796 0.11 -1.1
950,509 - Rru_A0796 0.19 -0.3

Or see this region's nucleotide sequence