Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0703

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0702 and Rru_A0703 are separated by 3 nucleotidesRru_A0703 and Rru_A0704 are separated by 72 nucleotides Rru_A0702: Rru_A0702 - Molybdate ABC transporter, ATP-binding protein (NCBI), at 830,881 to 831,993 _A0702 Rru_A0703: Rru_A0703 - Molybdate ABC transporter, permease protein (NCBI), at 831,997 to 832,689 _A0703 Rru_A0704: Rru_A0704 - Molybdenum ABC transporter, periplasmic binding protein (NCBI), at 832,762 to 833,538 _A0704 Position (kb) 831 832 833Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 831.147 kb on + strand, within Rru_A0702at 831.148 kb on - strand, within Rru_A0702at 831.434 kb on + strand, within Rru_A0702at 831.435 kb on - strand, within Rru_A0702at 831.435 kb on - strand, within Rru_A0702at 831.435 kb on - strand, within Rru_A0702at 831.668 kb on + strand, within Rru_A0702at 831.723 kb on + strand, within Rru_A0702at 831.723 kb on + strand, within Rru_A0702at 831.724 kb on - strand, within Rru_A0702at 831.984 kb on + strandat 831.984 kb on + strandat 831.985 kb on - strandat 831.998 kb on + strandat 832.128 kb on + strand, within Rru_A0703at 832.129 kb on - strand, within Rru_A0703at 832.131 kb on - strand, within Rru_A0703at 832.167 kb on + strand, within Rru_A0703at 832.445 kb on + strand, within Rru_A0703at 832.446 kb on - strand, within Rru_A0703at 832.529 kb on - strand, within Rru_A0703at 832.754 kb on + strandat 832.784 kb on + strandat 832.880 kb on + strand, within Rru_A0704at 832.881 kb on - strand, within Rru_A0704at 832.881 kb on - strand, within Rru_A0704at 832.881 kb on - strand, within Rru_A0704at 832.958 kb on + strand, within Rru_A0704at 832.959 kb on - strand, within Rru_A0704at 833.084 kb on + strand, within Rru_A0704at 833.085 kb on - strand, within Rru_A0704at 833.085 kb on - strand, within Rru_A0704at 833.273 kb on + strand, within Rru_A0704at 833.274 kb on - strand, within Rru_A0704at 833.274 kb on - strand, within Rru_A0704at 833.274 kb on - strand, within Rru_A0704at 833.274 kb on - strand, within Rru_A0704at 833.274 kb on - strand, within Rru_A0704at 833.274 kb on - strand, within Rru_A0704at 833.451 kb on + strand, within Rru_A0704at 833.452 kb on - strand, within Rru_A0704at 833.452 kb on - strand, within Rru_A0704at 833.533 kb on - strandat 833.614 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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831,147 + Rru_A0702 0.24 +0.6
831,148 - Rru_A0702 0.24 -0.2
831,434 + Rru_A0702 0.50 -3.6
831,435 - Rru_A0702 0.50 -0.3
831,435 - Rru_A0702 0.50 +0.1
831,435 - Rru_A0702 0.50 +0.6
831,668 + Rru_A0702 0.71 +0.6
831,723 + Rru_A0702 0.76 +1.8
831,723 + Rru_A0702 0.76 +0.0
831,724 - Rru_A0702 0.76 -0.7
831,984 + +1.3
831,984 + -0.7
831,985 - +0.4
831,998 + -2.3
832,128 + Rru_A0703 0.19 -1.9
832,129 - Rru_A0703 0.19 -1.7
832,131 - Rru_A0703 0.19 -2.2
832,167 + Rru_A0703 0.25 -2.9
832,445 + Rru_A0703 0.65 -0.6
832,446 - Rru_A0703 0.65 -0.0
832,529 - Rru_A0703 0.77 +0.6
832,754 + -1.1
832,784 + -0.6
832,880 + Rru_A0704 0.15 -1.6
832,881 - Rru_A0704 0.15 -1.4
832,881 - Rru_A0704 0.15 +0.8
832,881 - Rru_A0704 0.15 +0.6
832,958 + Rru_A0704 0.25 -1.0
832,959 - Rru_A0704 0.25 -3.2
833,084 + Rru_A0704 0.41 +0.5
833,085 - Rru_A0704 0.42 +1.4
833,085 - Rru_A0704 0.42 +1.9
833,273 + Rru_A0704 0.66 -1.1
833,274 - Rru_A0704 0.66 +0.5
833,274 - Rru_A0704 0.66 +0.0
833,274 - Rru_A0704 0.66 -0.2
833,274 - Rru_A0704 0.66 -0.7
833,274 - Rru_A0704 0.66 +0.0
833,274 - Rru_A0704 0.66 -0.8
833,451 + Rru_A0704 0.89 -0.3
833,452 - Rru_A0704 0.89 -0.7
833,452 - Rru_A0704 0.89 +0.3
833,533 - -1.0
833,614 - +0.9

Or see this region's nucleotide sequence