Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0608 and Rru_A0609 are separated by 147 nucleotides Rru_A0609 and Rru_A0610 are separated by 108 nucleotides
Rru_A0608: Rru_A0608 - TRAP transporter solute receptor, TAXI family (NCBI), at 720,126 to 721,106
_A0608
Rru_A0609: Rru_A0609 - UspA (NCBI), at 721,254 to 721,682
_A0609
Rru_A0610: Rru_A0610 - hypothetical protein (NCBI), at 721,791 to 722,924
_A0610
Position (kb) 721
722 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 720.255 kb on + strand, within Rru_A0608 at 720.255 kb on + strand, within Rru_A0608 at 720.255 kb on + strand, within Rru_A0608 at 720.255 kb on + strand, within Rru_A0608 at 720.442 kb on - strand, within Rru_A0608 at 720.720 kb on + strand, within Rru_A0608 at 720.720 kb on + strand, within Rru_A0608 at 720.720 kb on + strand, within Rru_A0608 at 720.720 kb on + strand, within Rru_A0608 at 720.721 kb on - strand, within Rru_A0608 at 720.721 kb on - strand, within Rru_A0608 at 720.721 kb on - strand, within Rru_A0608 at 720.721 kb on - strand, within Rru_A0608 at 720.834 kb on + strand, within Rru_A0608 at 720.834 kb on + strand, within Rru_A0608 at 720.834 kb on + strand, within Rru_A0608 at 720.834 kb on + strand, within Rru_A0608 at 720.835 kb on - strand, within Rru_A0608 at 720.864 kb on + strand, within Rru_A0608 at 720.884 kb on + strand, within Rru_A0608 at 720.948 kb on + strand, within Rru_A0608 at 720.948 kb on + strand, within Rru_A0608 at 720.948 kb on + strand, within Rru_A0608 at 720.949 kb on - strand, within Rru_A0608 at 721.075 kb on + strand at 721.075 kb on + strand at 721.076 kb on - strand at 721.076 kb on - strand at 721.076 kb on - strand at 721.081 kb on - strand at 721.081 kb on - strand at 721.100 kb on - strand at 721.134 kb on - strand at 721.257 kb on + strand at 721.257 kb on + strand at 721.257 kb on + strand at 721.258 kb on - strand at 721.258 kb on - strand at 721.258 kb on - strand at 721.258 kb on - strand at 721.258 kb on - strand at 721.258 kb on - strand at 721.258 kb on - strand at 721.258 kb on - strand at 721.258 kb on - strand at 721.259 kb on + strand at 721.259 kb on + strand at 721.260 kb on - strand at 721.260 kb on - strand at 721.310 kb on + strand, within Rru_A0609 at 721.311 kb on - strand, within Rru_A0609 at 721.311 kb on - strand, within Rru_A0609 at 721.311 kb on - strand, within Rru_A0609 at 721.311 kb on - strand, within Rru_A0609 at 721.367 kb on + strand, within Rru_A0609 at 721.367 kb on + strand, within Rru_A0609 at 721.368 kb on - strand, within Rru_A0609 at 721.508 kb on + strand, within Rru_A0609 at 721.508 kb on + strand, within Rru_A0609 at 721.508 kb on + strand, within Rru_A0609 at 721.508 kb on + strand, within Rru_A0609 at 721.509 kb on - strand, within Rru_A0609 at 721.513 kb on + strand, within Rru_A0609 at 721.514 kb on - strand, within Rru_A0609 at 721.530 kb on + strand, within Rru_A0609 at 721.680 kb on + strand at 721.681 kb on - strand at 721.681 kb on - strand at 721.732 kb on - strand at 721.735 kb on + strand at 721.736 kb on - strand at 721.736 kb on - strand at 721.736 kb on - strand at 721.760 kb on - strand at 721.760 kb on - strand at 721.787 kb on + strand at 721.787 kb on + strand at 721.787 kb on + strand at 721.787 kb on + strand at 721.787 kb on + strand at 721.787 kb on + strand at 721.787 kb on + strand at 721.788 kb on - strand at 721.788 kb on - strand at 721.788 kb on - strand at 721.788 kb on - strand at 721.788 kb on - strand at 721.788 kb on - strand at 721.788 kb on - strand at 722.255 kb on + strand, within Rru_A0610 at 722.255 kb on + strand, within Rru_A0610 at 722.256 kb on - strand, within Rru_A0610 at 722.264 kb on + strand, within Rru_A0610 at 722.601 kb on + strand, within Rru_A0610
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 720,255 + Rru_A0608 0.13 -1.0 720,255 + Rru_A0608 0.13 -0.9 720,255 + Rru_A0608 0.13 -0.1 720,255 + Rru_A0608 0.13 -1.5 720,442 - Rru_A0608 0.32 -0.8 720,720 + Rru_A0608 0.61 +0.4 720,720 + Rru_A0608 0.61 -0.6 720,720 + Rru_A0608 0.61 -2.4 720,720 + Rru_A0608 0.61 +0.1 720,721 - Rru_A0608 0.61 -4.8 720,721 - Rru_A0608 0.61 +0.8 720,721 - Rru_A0608 0.61 +0.2 720,721 - Rru_A0608 0.61 +0.3 720,834 + Rru_A0608 0.72 +0.3 720,834 + Rru_A0608 0.72 +0.8 720,834 + Rru_A0608 0.72 -2.6 720,834 + Rru_A0608 0.72 +0.0 720,835 - Rru_A0608 0.72 -0.8 720,864 + Rru_A0608 0.75 -0.9 720,884 + Rru_A0608 0.77 -4.2 720,948 + Rru_A0608 0.84 -2.4 720,948 + Rru_A0608 0.84 +0.3 720,948 + Rru_A0608 0.84 +1.0 720,949 - Rru_A0608 0.84 -1.2 721,075 + +0.3 721,075 + -4.3 721,076 - -0.5 721,076 - +1.3 721,076 - -0.3 721,081 - -3.7 721,081 - -3.2 721,100 - +1.0 721,134 - -1.3 721,257 + +0.8 721,257 + +0.2 721,257 + -0.8 721,258 - -0.5 721,258 - -0.5 721,258 - -0.3 721,258 - -0.3 721,258 - +0.7 721,258 - +0.3 721,258 - -2.0 721,258 - -0.6 721,258 - -1.1 721,259 + +0.2 721,259 + +0.9 721,260 - +0.5 721,260 - +0.9 721,310 + Rru_A0609 0.13 -1.3 721,311 - Rru_A0609 0.13 +0.2 721,311 - Rru_A0609 0.13 -3.6 721,311 - Rru_A0609 0.13 +0.3 721,311 - Rru_A0609 0.13 -2.9 721,367 + Rru_A0609 0.26 -3.0 721,367 + Rru_A0609 0.26 -0.5 721,368 - Rru_A0609 0.27 +0.4 721,508 + Rru_A0609 0.59 +0.0 721,508 + Rru_A0609 0.59 -4.1 721,508 + Rru_A0609 0.59 -0.7 721,508 + Rru_A0609 0.59 -0.1 721,509 - Rru_A0609 0.59 -0.1 721,513 + Rru_A0609 0.60 +0.7 721,514 - Rru_A0609 0.61 -0.0 721,530 + Rru_A0609 0.64 -0.0 721,680 + -1.9 721,681 - -0.9 721,681 - -0.6 721,732 - -0.9 721,735 + -0.0 721,736 - +0.3 721,736 - +0.9 721,736 - +2.4 721,760 - +0.9 721,760 - -0.0 721,787 + -0.3 721,787 + +0.5 721,787 + -0.0 721,787 + +0.3 721,787 + -0.1 721,787 + +1.3 721,787 + -2.9 721,788 - -2.1 721,788 - +2.8 721,788 - +0.9 721,788 - +0.8 721,788 - +1.0 721,788 - -0.0 721,788 - +1.2 722,255 + Rru_A0610 0.41 +1.2 722,255 + Rru_A0610 0.41 +1.0 722,256 - Rru_A0610 0.41 +1.3 722,264 + Rru_A0610 0.42 +1.4 722,601 + Rru_A0610 0.71 -0.3
Or see this region's nucleotide sequence