Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0413 and Rru_A0414 overlap by 4 nucleotides Rru_A0414 and Rru_A0415 are separated by 294 nucleotides Rru_A0415 and Rru_A0416 are separated by 107 nucleotides
Rru_A0413: Rru_A0413 - Ribosomal protein S18 (NCBI), at 490,521 to 490,757
_A0413
Rru_A0414: Rru_A0414 - Ribosomal protein S6 (NCBI), at 490,754 to 491,236
_A0414
Rru_A0415: Rru_A0415 - Malonyl CoA-acyl carrier protein transacylase (NCBI), at 491,531 to 492,469
_A0415
Rru_A0416: Rru_A0416 - 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI), at 492,577 to 493,314
_A0416
Position (kb)
491
492
493 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 491.353 kb on - strand at 491.353 kb on - strand at 492.467 kb on + strand at 492.468 kb on - strand at 492.468 kb on - strand at 492.468 kb on - strand at 492.468 kb on - strand at 492.468 kb on - strand at 492.468 kb on - strand at 492.515 kb on + strand at 492.522 kb on - strand at 492.522 kb on - strand at 493.405 kb on + strand at 493.405 kb on + strand at 493.405 kb on + strand at 493.405 kb on + strand at 493.410 kb on + strand at 493.410 kb on + strand at 493.410 kb on + strand at 493.426 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 491,353 - +0.6 491,353 - +0.3 492,467 + -0.6 492,468 - -4.6 492,468 - -3.0 492,468 - +1.3 492,468 - +1.4 492,468 - +0.7 492,468 - +2.4 492,515 + -0.1 492,522 - -1.5 492,522 - -2.0 493,405 + +0.5 493,405 + -2.8 493,405 + -2.7 493,405 + -1.6 493,410 + +1.1 493,410 + -0.5 493,410 + -0.5 493,426 + -3.4
Or see this region's nucleotide sequence