Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0223

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0222 and Rru_A0223 are separated by 446 nucleotidesRru_A0223 and Rru_A0224 are separated by 17 nucleotidesRru_A0224 and Rru_A0225 overlap by 4 nucleotides Rru_A0222: Rru_A0222 - Glyceraldehyde-3-phosphate dehydrogenase, type I (NCBI), at 273,545 to 274,552 _A0222 Rru_A0223: Rru_A0223 - Protein of unknown function DUF344 (NCBI), at 274,999 to 276,603 _A0223 Rru_A0224: Rru_A0224 - Protein of unknown function DUF160 (NCBI), at 276,621 to 277,595 _A0224 Rru_A0225: Rru_A0225 - Metal dependent phosphohydrolase, HD region (NCBI), at 277,592 to 278,266 _A0225 Position (kb) 274 275 276 277Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 274.567 kb on - strandat 274.949 kb on + strandat 274.949 kb on + strandat 274.949 kb on + strandat 274.949 kb on + strandat 274.949 kb on + strandat 274.950 kb on - strandat 274.950 kb on - strandat 274.950 kb on - strandat 274.950 kb on - strandat 274.993 kb on - strandat 274.993 kb on - strandat 275.145 kb on + strandat 275.145 kb on + strandat 275.145 kb on + strandat 275.218 kb on + strand, within Rru_A0223at 275.219 kb on - strand, within Rru_A0223at 275.439 kb on + strand, within Rru_A0223at 275.440 kb on - strand, within Rru_A0223at 275.485 kb on - strand, within Rru_A0223at 275.554 kb on + strand, within Rru_A0223at 275.554 kb on + strand, within Rru_A0223at 275.554 kb on + strand, within Rru_A0223at 275.555 kb on - strand, within Rru_A0223at 275.622 kb on + strand, within Rru_A0223at 275.622 kb on + strand, within Rru_A0223at 275.622 kb on + strand, within Rru_A0223at 275.623 kb on - strand, within Rru_A0223at 275.623 kb on - strand, within Rru_A0223at 275.647 kb on + strand, within Rru_A0223at 275.647 kb on + strand, within Rru_A0223at 275.648 kb on - strand, within Rru_A0223at 275.880 kb on + strand, within Rru_A0223at 275.881 kb on - strand, within Rru_A0223at 275.881 kb on - strand, within Rru_A0223at 275.881 kb on - strand, within Rru_A0223at 275.908 kb on + strand, within Rru_A0223at 275.908 kb on + strand, within Rru_A0223at 275.908 kb on + strand, within Rru_A0223at 275.908 kb on + strand, within Rru_A0223at 275.909 kb on - strand, within Rru_A0223at 275.909 kb on - strand, within Rru_A0223at 276.118 kb on + strand, within Rru_A0223at 276.118 kb on + strand, within Rru_A0223at 276.119 kb on - strand, within Rru_A0223at 276.119 kb on - strand, within Rru_A0223at 276.142 kb on - strand, within Rru_A0223at 276.217 kb on + strand, within Rru_A0223at 276.218 kb on - strand, within Rru_A0223at 276.218 kb on - strand, within Rru_A0223at 276.218 kb on - strand, within Rru_A0223at 276.218 kb on - strand, within Rru_A0223at 276.247 kb on + strand, within Rru_A0223at 276.248 kb on - strand, within Rru_A0223at 276.249 kb on + strand, within Rru_A0223at 276.386 kb on + strand, within Rru_A0223at 276.387 kb on - strand, within Rru_A0223at 276.427 kb on + strand, within Rru_A0223at 276.428 kb on - strand, within Rru_A0223at 276.428 kb on - strand, within Rru_A0223at 276.474 kb on - strandat 276.474 kb on - strandat 276.601 kb on + strandat 276.602 kb on - strandat 276.602 kb on - strandat 276.622 kb on + strandat 276.679 kb on + strandat 276.680 kb on - strandat 276.797 kb on - strand, within Rru_A0224at 276.799 kb on + strand, within Rru_A0224at 277.192 kb on + strand, within Rru_A0224at 277.193 kb on - strand, within Rru_A0224at 277.276 kb on + strand, within Rru_A0224at 277.495 kb on + strand, within Rru_A0224at 277.496 kb on - strand, within Rru_A0224

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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274,567 - -0.1
274,949 + -0.0
274,949 + +0.1
274,949 + +0.7
274,949 + -1.0
274,949 + +0.1
274,950 - -1.1
274,950 - +0.4
274,950 - +0.2
274,950 - -0.2
274,993 - -0.7
274,993 - -0.9
275,145 + +2.3
275,145 + -0.0
275,145 + -1.8
275,218 + Rru_A0223 0.14 -3.2
275,219 - Rru_A0223 0.14 -0.2
275,439 + Rru_A0223 0.27 -0.2
275,440 - Rru_A0223 0.27 -0.4
275,485 - Rru_A0223 0.30 -0.3
275,554 + Rru_A0223 0.35 -1.1
275,554 + Rru_A0223 0.35 -0.0
275,554 + Rru_A0223 0.35 -0.1
275,555 - Rru_A0223 0.35 -0.4
275,622 + Rru_A0223 0.39 -0.3
275,622 + Rru_A0223 0.39 -0.3
275,622 + Rru_A0223 0.39 -0.2
275,623 - Rru_A0223 0.39 -0.2
275,623 - Rru_A0223 0.39 -0.4
275,647 + Rru_A0223 0.40 -1.0
275,647 + Rru_A0223 0.40 +0.5
275,648 - Rru_A0223 0.40 +0.5
275,880 + Rru_A0223 0.55 -0.1
275,881 - Rru_A0223 0.55 +0.1
275,881 - Rru_A0223 0.55 -0.3
275,881 - Rru_A0223 0.55 -2.1
275,908 + Rru_A0223 0.57 +0.6
275,908 + Rru_A0223 0.57 -0.3
275,908 + Rru_A0223 0.57 -0.0
275,908 + Rru_A0223 0.57 -0.3
275,909 - Rru_A0223 0.57 +1.4
275,909 - Rru_A0223 0.57 +0.3
276,118 + Rru_A0223 0.70 -1.0
276,118 + Rru_A0223 0.70 -2.5
276,119 - Rru_A0223 0.70 -0.4
276,119 - Rru_A0223 0.70 +0.1
276,142 - Rru_A0223 0.71 -2.1
276,217 + Rru_A0223 0.76 +0.7
276,218 - Rru_A0223 0.76 +0.1
276,218 - Rru_A0223 0.76 -1.3
276,218 - Rru_A0223 0.76 -0.8
276,218 - Rru_A0223 0.76 -0.7
276,247 + Rru_A0223 0.78 +0.9
276,248 - Rru_A0223 0.78 -1.1
276,249 + Rru_A0223 0.78 -0.6
276,386 + Rru_A0223 0.86 -1.2
276,387 - Rru_A0223 0.86 -2.7
276,427 + Rru_A0223 0.89 -0.6
276,428 - Rru_A0223 0.89 -0.3
276,428 - Rru_A0223 0.89 -0.3
276,474 - -1.4
276,474 - +1.5
276,601 + -1.6
276,602 - +0.5
276,602 - +0.3
276,622 + -3.7
276,679 + +1.2
276,680 - -2.1
276,797 - Rru_A0224 0.18 -1.3
276,799 + Rru_A0224 0.18 +0.6
277,192 + Rru_A0224 0.59 -0.9
277,193 - Rru_A0224 0.59 +1.0
277,276 + Rru_A0224 0.67 -0.2
277,495 + Rru_A0224 0.90 +0.7
277,496 - Rru_A0224 0.90 +0.4

Or see this region's nucleotide sequence