Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0148

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0147 and Rru_A0148 are separated by 60 nucleotidesRru_A0148 and Rru_A0149 are separated by 12 nucleotides Rru_A0147: Rru_A0147 - Major facilitator superfamily MFS_1 (NCBI), at 170,126 to 171,778 _A0147 Rru_A0148: Rru_A0148 - GTP-binding protein TypA (NCBI), at 171,839 to 173,680 _A0148 Rru_A0149: Rru_A0149 - PfkB (NCBI), at 173,693 to 174,916 _A0149 Position (kb) 171 172 173 174Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 170.949 kb on - strand, within Rru_A0147at 171.085 kb on - strand, within Rru_A0147at 171.193 kb on + strand, within Rru_A0147at 171.194 kb on - strand, within Rru_A0147at 171.195 kb on + strand, within Rru_A0147at 171.195 kb on + strand, within Rru_A0147at 171.195 kb on + strand, within Rru_A0147at 171.195 kb on + strand, within Rru_A0147at 171.195 kb on + strand, within Rru_A0147at 171.196 kb on - strand, within Rru_A0147at 171.196 kb on - strand, within Rru_A0147at 171.196 kb on - strand, within Rru_A0147at 171.196 kb on - strand, within Rru_A0147at 171.365 kb on + strand, within Rru_A0147at 171.365 kb on + strand, within Rru_A0147at 171.365 kb on + strand, within Rru_A0147at 171.365 kb on + strand, within Rru_A0147at 171.365 kb on + strand, within Rru_A0147at 171.365 kb on + strand, within Rru_A0147at 171.366 kb on - strand, within Rru_A0147at 171.366 kb on - strand, within Rru_A0147at 171.366 kb on - strand, within Rru_A0147at 171.366 kb on - strand, within Rru_A0147at 171.471 kb on + strand, within Rru_A0147at 171.471 kb on + strand, within Rru_A0147at 171.819 kb on + strandat 171.951 kb on + strandat 171.951 kb on + strandat 171.951 kb on + strandat 171.951 kb on + strandat 171.952 kb on - strandat 171.952 kb on - strandat 171.952 kb on - strandat 172.167 kb on + strand, within Rru_A0148at 172.498 kb on + strand, within Rru_A0148at 172.498 kb on + strand, within Rru_A0148at 172.499 kb on - strand, within Rru_A0148at 172.499 kb on - strand, within Rru_A0148at 172.500 kb on + strand, within Rru_A0148at 172.501 kb on - strand, within Rru_A0148at 172.501 kb on - strand, within Rru_A0148at 172.773 kb on + strand, within Rru_A0148at 172.773 kb on + strand, within Rru_A0148at 172.773 kb on + strand, within Rru_A0148at 172.774 kb on - strand, within Rru_A0148at 172.849 kb on + strand, within Rru_A0148at 173.020 kb on - strand, within Rru_A0148at 173.029 kb on - strand, within Rru_A0148at 173.704 kb on + strandat 173.704 kb on + strandat 173.704 kb on + strandat 173.705 kb on - strandat 173.705 kb on - strandat 174.211 kb on - strand, within Rru_A0149at 174.222 kb on + strand, within Rru_A0149at 174.222 kb on + strand, within Rru_A0149at 174.222 kb on + strand, within Rru_A0149at 174.223 kb on - strand, within Rru_A0149at 174.223 kb on - strand, within Rru_A0149at 174.223 kb on - strand, within Rru_A0149at 174.294 kb on + strand, within Rru_A0149at 174.294 kb on + strand, within Rru_A0149at 174.294 kb on + strand, within Rru_A0149at 174.294 kb on + strand, within Rru_A0149at 174.294 kb on + strand, within Rru_A0149at 174.294 kb on + strand, within Rru_A0149at 174.294 kb on + strand, within Rru_A0149at 174.295 kb on - strand, within Rru_A0149at 174.295 kb on - strand, within Rru_A0149at 174.493 kb on + strand, within Rru_A0149at 174.493 kb on + strand, within Rru_A0149at 174.494 kb on - strand, within Rru_A0149at 174.544 kb on - strand, within Rru_A0149

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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170,949 - Rru_A0147 0.50 +0.3
171,085 - Rru_A0147 0.58 -0.1
171,193 + Rru_A0147 0.65 +1.5
171,194 - Rru_A0147 0.65 +0.2
171,195 + Rru_A0147 0.65 +0.9
171,195 + Rru_A0147 0.65 +1.1
171,195 + Rru_A0147 0.65 +0.7
171,195 + Rru_A0147 0.65 -1.0
171,195 + Rru_A0147 0.65 -1.0
171,196 - Rru_A0147 0.65 +1.0
171,196 - Rru_A0147 0.65 +1.0
171,196 - Rru_A0147 0.65 +0.8
171,196 - Rru_A0147 0.65 +1.6
171,365 + Rru_A0147 0.75 +1.2
171,365 + Rru_A0147 0.75 +1.5
171,365 + Rru_A0147 0.75 +1.8
171,365 + Rru_A0147 0.75 +1.5
171,365 + Rru_A0147 0.75 +1.4
171,365 + Rru_A0147 0.75 -1.3
171,366 - Rru_A0147 0.75 +1.3
171,366 - Rru_A0147 0.75 +0.8
171,366 - Rru_A0147 0.75 +0.8
171,366 - Rru_A0147 0.75 +1.5
171,471 + Rru_A0147 0.81 +0.2
171,471 + Rru_A0147 0.81 +1.6
171,819 + -0.2
171,951 + +0.5
171,951 + +0.6
171,951 + -1.1
171,951 + +0.7
171,952 - +0.9
171,952 - -3.0
171,952 - -1.6
172,167 + Rru_A0148 0.18 -0.3
172,498 + Rru_A0148 0.36 -0.5
172,498 + Rru_A0148 0.36 -0.9
172,499 - Rru_A0148 0.36 +0.0
172,499 - Rru_A0148 0.36 -3.4
172,500 + Rru_A0148 0.36 +0.2
172,501 - Rru_A0148 0.36 +0.5
172,501 - Rru_A0148 0.36 -1.2
172,773 + Rru_A0148 0.51 +1.7
172,773 + Rru_A0148 0.51 +1.7
172,773 + Rru_A0148 0.51 +0.1
172,774 - Rru_A0148 0.51 -0.8
172,849 + Rru_A0148 0.55 -2.7
173,020 - Rru_A0148 0.64 -2.7
173,029 - Rru_A0148 0.65 +0.3
173,704 + -0.4
173,704 + -1.8
173,704 + +0.4
173,705 - -1.8
173,705 - +2.5
174,211 - Rru_A0149 0.42 +0.0
174,222 + Rru_A0149 0.43 -0.2
174,222 + Rru_A0149 0.43 -0.9
174,222 + Rru_A0149 0.43 +0.1
174,223 - Rru_A0149 0.43 +1.8
174,223 - Rru_A0149 0.43 +2.8
174,223 - Rru_A0149 0.43 +1.4
174,294 + Rru_A0149 0.49 -0.5
174,294 + Rru_A0149 0.49 -0.2
174,294 + Rru_A0149 0.49 +0.1
174,294 + Rru_A0149 0.49 +0.0
174,294 + Rru_A0149 0.49 -0.1
174,294 + Rru_A0149 0.49 +0.3
174,294 + Rru_A0149 0.49 +1.1
174,295 - Rru_A0149 0.49 +1.3
174,295 - Rru_A0149 0.49 +1.2
174,493 + Rru_A0149 0.65 -0.1
174,493 + Rru_A0149 0.65 -0.1
174,494 - Rru_A0149 0.65 +0.3
174,544 - Rru_A0149 0.70 -0.0

Or see this region's nucleotide sequence