Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_B0037 and Rru_B0038 are separated by 454 nucleotides Rru_B0038 and Rru_B0039 are separated by 122 nucleotides
Rru_B0037: Rru_B0037 - Hemolysin-type calcium-binding region (NCBI), at 35,373 to 37,865
_B0037
Rru_B0038: Rru_B0038 - dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI), at 38,320 to 38,886
_B0038
Rru_B0039: Rru_B0039 - Type I secretion system ATPase, PrtD (NCBI), at 39,009 to 40,766
_B0039
Position (kb) 38
39 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 37.328 kb on + strand, within Rru_B0037 at 37.328 kb on + strand, within Rru_B0037 at 37.328 kb on + strand, within Rru_B0037 at 37.328 kb on + strand, within Rru_B0037 at 37.328 kb on + strand, within Rru_B0037 at 37.328 kb on + strand, within Rru_B0037 at 37.329 kb on - strand, within Rru_B0037 at 37.329 kb on - strand, within Rru_B0037 at 37.329 kb on - strand, within Rru_B0037 at 37.329 kb on - strand, within Rru_B0037 at 37.340 kb on + strand, within Rru_B0037 at 37.340 kb on + strand, within Rru_B0037 at 37.340 kb on + strand, within Rru_B0037 at 37.340 kb on + strand, within Rru_B0037 at 37.340 kb on + strand, within Rru_B0037 at 37.340 kb on + strand, within Rru_B0037 at 37.340 kb on + strand, within Rru_B0037 at 37.341 kb on - strand, within Rru_B0037 at 37.341 kb on - strand, within Rru_B0037 at 37.341 kb on - strand, within Rru_B0037 at 37.341 kb on - strand, within Rru_B0037 at 37.341 kb on - strand, within Rru_B0037 at 37.344 kb on - strand, within Rru_B0037 at 37.344 kb on - strand, within Rru_B0037 at 37.366 kb on + strand, within Rru_B0037 at 37.366 kb on + strand, within Rru_B0037 at 37.367 kb on - strand, within Rru_B0037 at 37.421 kb on + strand, within Rru_B0037 at 37.422 kb on - strand, within Rru_B0037 at 37.422 kb on - strand, within Rru_B0037 at 37.422 kb on - strand, within Rru_B0037 at 37.429 kb on + strand, within Rru_B0037 at 37.429 kb on + strand, within Rru_B0037 at 37.429 kb on + strand, within Rru_B0037 at 37.430 kb on - strand, within Rru_B0037 at 37.430 kb on - strand, within Rru_B0037 at 37.507 kb on + strand, within Rru_B0037 at 37.507 kb on + strand, within Rru_B0037 at 37.507 kb on + strand, within Rru_B0037 at 37.507 kb on + strand, within Rru_B0037 at 37.507 kb on + strand, within Rru_B0037 at 37.508 kb on - strand, within Rru_B0037 at 37.570 kb on + strand, within Rru_B0037 at 37.570 kb on + strand, within Rru_B0037 at 37.570 kb on + strand, within Rru_B0037 at 37.570 kb on + strand, within Rru_B0037 at 37.570 kb on + strand, within Rru_B0037 at 37.570 kb on + strand, within Rru_B0037 at 37.570 kb on + strand, within Rru_B0037 at 37.571 kb on - strand, within Rru_B0037 at 37.571 kb on - strand, within Rru_B0037 at 37.571 kb on - strand, within Rru_B0037 at 37.571 kb on - strand, within Rru_B0037 at 37.571 kb on - strand, within Rru_B0037 at 37.571 kb on - strand, within Rru_B0037 at 37.571 kb on - strand, within Rru_B0037 at 37.571 kb on - strand, within Rru_B0037 at 37.631 kb on - strand at 37.708 kb on + strand at 37.708 kb on + strand at 37.709 kb on - strand at 37.709 kb on - strand at 37.709 kb on - strand at 37.711 kb on + strand at 37.711 kb on + strand at 37.711 kb on + strand at 37.711 kb on + strand at 37.712 kb on - strand at 37.712 kb on - strand at 37.726 kb on + strand at 37.726 kb on + strand at 37.726 kb on + strand at 37.726 kb on + strand at 37.727 kb on - strand at 37.727 kb on - strand at 37.727 kb on - strand at 37.727 kb on - strand at 37.727 kb on - strand at 37.727 kb on - strand at 37.727 kb on - strand at 37.768 kb on + strand at 37.768 kb on + strand at 37.768 kb on + strand at 37.768 kb on + strand at 37.768 kb on + strand at 37.768 kb on + strand at 37.769 kb on - strand at 37.769 kb on - strand at 37.769 kb on - strand at 37.769 kb on - strand at 37.837 kb on + strand at 37.838 kb on - strand at 37.840 kb on + strand at 37.840 kb on + strand at 37.840 kb on + strand at 37.840 kb on + strand at 37.841 kb on - strand at 37.841 kb on - strand at 37.841 kb on - strand at 37.851 kb on - strand at 37.870 kb on + strand at 37.871 kb on - strand at 37.897 kb on + strand at 37.898 kb on - strand at 37.898 kb on - strand at 37.898 kb on - strand at 38.005 kb on + strand at 38.006 kb on - strand at 38.006 kb on - strand at 38.008 kb on + strand at 38.008 kb on + strand at 38.008 kb on + strand at 38.008 kb on + strand at 38.009 kb on - strand at 38.009 kb on - strand at 38.034 kb on + strand at 38.035 kb on - strand at 38.035 kb on - strand at 38.035 kb on - strand at 38.036 kb on + strand at 38.036 kb on + strand at 38.036 kb on + strand at 38.037 kb on - strand at 38.037 kb on - strand at 38.037 kb on - strand at 38.037 kb on - strand at 38.054 kb on + strand at 38.054 kb on + strand at 38.054 kb on + strand at 38.054 kb on + strand at 38.054 kb on + strand at 38.054 kb on + strand at 38.055 kb on - strand at 38.058 kb on + strand at 38.058 kb on + strand at 38.058 kb on + strand at 38.059 kb on - strand at 38.059 kb on - strand at 38.163 kb on + strand at 38.163 kb on + strand at 38.178 kb on + strand at 38.231 kb on + strand at 38.251 kb on + strand at 38.251 kb on + strand at 38.252 kb on - strand at 38.252 kb on - strand at 38.721 kb on + strand, within Rru_B0038 at 38.879 kb on - strand at 38.879 kb on - strand at 38.879 kb on - strand at 38.879 kb on - strand at 38.885 kb on - strand at 38.909 kb on - strand at 38.937 kb on + strand at 38.937 kb on + strand at 38.937 kb on + strand at 38.938 kb on - strand at 38.938 kb on - strand at 38.938 kb on - strand at 38.986 kb on + strand at 39.122 kb on + strand at 39.153 kb on + strand at 39.153 kb on + strand at 39.154 kb on - strand at 39.168 kb on + strand at 39.169 kb on - strand at 39.329 kb on + strand, within Rru_B0039 at 39.329 kb on + strand, within Rru_B0039 at 39.329 kb on + strand, within Rru_B0039 at 39.330 kb on - strand, within Rru_B0039 at 39.330 kb on - strand, within Rru_B0039 at 39.330 kb on - strand, within Rru_B0039 at 39.372 kb on + strand, within Rru_B0039 at 39.372 kb on + strand, within Rru_B0039 at 39.372 kb on + strand, within Rru_B0039 at 39.373 kb on - strand, within Rru_B0039 at 39.373 kb on - strand, within Rru_B0039 at 39.375 kb on - strand, within Rru_B0039 at 39.375 kb on - strand, within Rru_B0039 at 39.375 kb on - strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.615 kb on + strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.616 kb on - strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.814 kb on - strand, within Rru_B0039 at 39.814 kb on - strand, within Rru_B0039 at 39.814 kb on - strand, within Rru_B0039 at 39.814 kb on - strand, within Rru_B0039
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 37,328 + Rru_B0037 0.78 +1.3 37,328 + Rru_B0037 0.78 -1.2 37,328 + Rru_B0037 0.78 +0.0 37,328 + Rru_B0037 0.78 +0.1 37,328 + Rru_B0037 0.78 -0.7 37,328 + Rru_B0037 0.78 -2.6 37,329 - Rru_B0037 0.78 -3.8 37,329 - Rru_B0037 0.78 +0.6 37,329 - Rru_B0037 0.78 -0.5 37,329 - Rru_B0037 0.78 -0.8 37,340 + Rru_B0037 0.79 -0.8 37,340 + Rru_B0037 0.79 +0.8 37,340 + Rru_B0037 0.79 +0.8 37,340 + Rru_B0037 0.79 -0.7 37,340 + Rru_B0037 0.79 -1.5 37,340 + Rru_B0037 0.79 -0.2 37,340 + Rru_B0037 0.79 -0.5 37,341 - Rru_B0037 0.79 -0.8 37,341 - Rru_B0037 0.79 +0.9 37,341 - Rru_B0037 0.79 +1.4 37,341 - Rru_B0037 0.79 +1.2 37,341 - Rru_B0037 0.79 +1.7 37,344 - Rru_B0037 0.79 +0.3 37,344 - Rru_B0037 0.79 -0.7 37,366 + Rru_B0037 0.80 -0.4 37,366 + Rru_B0037 0.80 +0.5 37,367 - Rru_B0037 0.80 +0.5 37,421 + Rru_B0037 0.82 -0.0 37,422 - Rru_B0037 0.82 -0.1 37,422 - Rru_B0037 0.82 +1.0 37,422 - Rru_B0037 0.82 -0.2 37,429 + Rru_B0037 0.82 -1.5 37,429 + Rru_B0037 0.82 +1.5 37,429 + Rru_B0037 0.82 +0.9 37,430 - Rru_B0037 0.83 +0.4 37,430 - Rru_B0037 0.83 -0.1 37,507 + Rru_B0037 0.86 +1.5 37,507 + Rru_B0037 0.86 +0.4 37,507 + Rru_B0037 0.86 -3.1 37,507 + Rru_B0037 0.86 +1.1 37,507 + Rru_B0037 0.86 -0.7 37,508 - Rru_B0037 0.86 +0.6 37,570 + Rru_B0037 0.88 -0.2 37,570 + Rru_B0037 0.88 -0.2 37,570 + Rru_B0037 0.88 -0.0 37,570 + Rru_B0037 0.88 +1.7 37,570 + Rru_B0037 0.88 -1.9 37,570 + Rru_B0037 0.88 -2.1 37,570 + Rru_B0037 0.88 -0.0 37,571 - Rru_B0037 0.88 -0.3 37,571 - Rru_B0037 0.88 -1.5 37,571 - Rru_B0037 0.88 -0.9 37,571 - Rru_B0037 0.88 +0.0 37,571 - Rru_B0037 0.88 +0.2 37,571 - Rru_B0037 0.88 +0.6 37,571 - Rru_B0037 0.88 +0.0 37,571 - Rru_B0037 0.88 -0.5 37,631 - +0.6 37,708 + -1.5 37,708 + -0.3 37,709 - +1.0 37,709 - -0.4 37,709 - +0.2 37,711 + -3.8 37,711 + +0.0 37,711 + +1.0 37,711 + +0.2 37,712 - +0.4 37,712 - +0.5 37,726 + +0.1 37,726 + -1.5 37,726 + +0.3 37,726 + -1.2 37,727 - -0.1 37,727 - -0.5 37,727 - -2.3 37,727 - +0.0 37,727 - -0.2 37,727 - +0.8 37,727 - +0.7 37,768 + +1.1 37,768 + -1.4 37,768 + +0.1 37,768 + -1.3 37,768 + +0.7 37,768 + +0.3 37,769 - +0.5 37,769 - +0.3 37,769 - -0.5 37,769 - -1.0 37,837 + -0.7 37,838 - -0.0 37,840 + -0.5 37,840 + -0.3 37,840 + +0.7 37,840 + -3.9 37,841 - -1.0 37,841 - +0.8 37,841 - -0.4 37,851 - -0.4 37,870 + -2.7 37,871 - +1.1 37,897 + +2.9 37,898 - +0.0 37,898 - -0.6 37,898 - -0.3 38,005 + -0.3 38,006 - -0.6 38,006 - +1.1 38,008 + -0.4 38,008 + -0.1 38,008 + -0.8 38,008 + -1.7 38,009 - -0.1 38,009 - +0.6 38,034 + +0.1 38,035 - -3.0 38,035 - -1.1 38,035 - +0.8 38,036 + -0.3 38,036 + +0.9 38,036 + -0.7 38,037 - -0.2 38,037 - +0.7 38,037 - +1.3 38,037 - -1.0 38,054 + -0.4 38,054 + +0.0 38,054 + +0.2 38,054 + +0.5 38,054 + +0.3 38,054 + +0.1 38,055 - +0.2 38,058 + -0.0 38,058 + +1.5 38,058 + -0.2 38,059 - +0.3 38,059 - +0.5 38,163 + -3.7 38,163 + +0.1 38,178 + -0.8 38,231 + +0.0 38,251 + +0.2 38,251 + -0.1 38,252 - +0.4 38,252 - +0.6 38,721 + Rru_B0038 0.71 -1.3 38,879 - +0.1 38,879 - -0.2 38,879 - +0.5 38,879 - -3.3 38,885 - -1.1 38,909 - +1.6 38,937 + -0.4 38,937 + -0.5 38,937 + -0.1 38,938 - +0.1 38,938 - -0.1 38,938 - -0.2 38,986 + -0.0 39,122 + -0.4 39,153 + +0.1 39,153 + -1.8 39,154 - -0.0 39,168 + +1.2 39,169 - -2.4 39,329 + Rru_B0039 0.18 +0.3 39,329 + Rru_B0039 0.18 +0.2 39,329 + Rru_B0039 0.18 +1.2 39,330 - Rru_B0039 0.18 +1.5 39,330 - Rru_B0039 0.18 +1.2 39,330 - Rru_B0039 0.18 -0.1 39,372 + Rru_B0039 0.21 -0.8 39,372 + Rru_B0039 0.21 +0.7 39,372 + Rru_B0039 0.21 +0.7 39,373 - Rru_B0039 0.21 -0.8 39,373 - Rru_B0039 0.21 +1.1 39,375 - Rru_B0039 0.21 -0.7 39,375 - Rru_B0039 0.21 -0.7 39,375 - Rru_B0039 0.21 +0.7 39,615 + Rru_B0039 0.34 -1.0 39,615 + Rru_B0039 0.34 +0.9 39,615 + Rru_B0039 0.34 -1.0 39,615 + Rru_B0039 0.34 -2.9 39,615 + Rru_B0039 0.34 -0.6 39,615 + Rru_B0039 0.34 -1.7 39,615 + Rru_B0039 0.34 +0.3 39,615 + Rru_B0039 0.34 +1.0 39,615 + Rru_B0039 0.34 +1.1 39,615 + Rru_B0039 0.34 +0.1 39,615 + Rru_B0039 0.34 +0.4 39,615 + Rru_B0039 0.34 -0.6 39,615 + Rru_B0039 0.34 -0.6 39,615 + Rru_B0039 0.34 +0.8 39,616 - Rru_B0039 0.35 -2.3 39,616 - Rru_B0039 0.35 +1.2 39,616 - Rru_B0039 0.35 -0.1 39,616 - Rru_B0039 0.35 +1.8 39,616 - Rru_B0039 0.35 -0.4 39,616 - Rru_B0039 0.35 -0.3 39,616 - Rru_B0039 0.35 -0.3 39,813 + Rru_B0039 0.46 +0.0 39,813 + Rru_B0039 0.46 +1.1 39,813 + Rru_B0039 0.46 -2.5 39,813 + Rru_B0039 0.46 +0.2 39,813 + Rru_B0039 0.46 -0.3 39,814 - Rru_B0039 0.46 +1.0 39,814 - Rru_B0039 0.46 +0.6 39,814 - Rru_B0039 0.46 -0.3 39,814 - Rru_B0039 0.46 +1.5
Or see this region's nucleotide sequence