Experiment: sodium fluoride 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0610 and mutS are separated by 38 nucleotides mutS and gltA are separated by 3 nucleotides
Synpcc7942_0610: Synpcc7942_0610 - hypothetical protein, at 597,977 to 599,776
_0610
Synpcc7942_0611: mutS - recombination and DNA strand exchange inhibitor protein, at 599,815 to 602,205
mutS
Synpcc7942_0612: gltA - methylcitrate synthase, at 602,209 to 603,369
gltA
Position (kb) 599
600
601
602
603 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 598.844 kb on + strand, within Synpcc7942_0610 at 598.869 kb on + strand, within Synpcc7942_0610 at 598.895 kb on - strand, within Synpcc7942_0610 at 598.984 kb on - strand, within Synpcc7942_0610 at 599.003 kb on + strand, within Synpcc7942_0610 at 599.004 kb on + strand, within Synpcc7942_0610 at 599.008 kb on + strand, within Synpcc7942_0610 at 599.014 kb on - strand, within Synpcc7942_0610 at 599.014 kb on - strand, within Synpcc7942_0610 at 599.028 kb on - strand, within Synpcc7942_0610 at 599.073 kb on - strand, within Synpcc7942_0610 at 599.092 kb on + strand, within Synpcc7942_0610 at 599.097 kb on + strand, within Synpcc7942_0610 at 599.098 kb on - strand, within Synpcc7942_0610 at 599.098 kb on - strand, within Synpcc7942_0610 at 599.098 kb on - strand, within Synpcc7942_0610 at 599.112 kb on + strand, within Synpcc7942_0610 at 599.120 kb on - strand, within Synpcc7942_0610 at 599.132 kb on - strand, within Synpcc7942_0610 at 599.134 kb on + strand, within Synpcc7942_0610 at 599.141 kb on + strand, within Synpcc7942_0610 at 599.141 kb on + strand, within Synpcc7942_0610 at 599.142 kb on - strand, within Synpcc7942_0610 at 599.149 kb on - strand, within Synpcc7942_0610 at 599.149 kb on - strand, within Synpcc7942_0610 at 599.149 kb on - strand, within Synpcc7942_0610 at 599.149 kb on - strand, within Synpcc7942_0610 at 599.149 kb on - strand, within Synpcc7942_0610 at 599.149 kb on - strand, within Synpcc7942_0610 at 599.149 kb on - strand, within Synpcc7942_0610 at 599.149 kb on - strand, within Synpcc7942_0610 at 599.156 kb on - strand, within Synpcc7942_0610 at 599.202 kb on + strand, within Synpcc7942_0610 at 599.372 kb on + strand, within Synpcc7942_0610 at 599.380 kb on - strand, within Synpcc7942_0610 at 599.422 kb on - strand, within Synpcc7942_0610 at 599.481 kb on + strand, within Synpcc7942_0610 at 599.489 kb on - strand, within Synpcc7942_0610 at 599.489 kb on - strand, within Synpcc7942_0610 at 599.489 kb on - strand, within Synpcc7942_0610 at 599.503 kb on + strand, within Synpcc7942_0610 at 599.511 kb on - strand, within Synpcc7942_0610 at 599.521 kb on - strand, within Synpcc7942_0610 at 599.523 kb on - strand, within Synpcc7942_0610 at 599.528 kb on + strand, within Synpcc7942_0610 at 599.528 kb on + strand, within Synpcc7942_0610 at 599.528 kb on + strand, within Synpcc7942_0610 at 599.528 kb on + strand, within Synpcc7942_0610 at 599.536 kb on - strand, within Synpcc7942_0610 at 599.536 kb on - strand, within Synpcc7942_0610 at 599.536 kb on - strand, within Synpcc7942_0610 at 599.536 kb on - strand, within Synpcc7942_0610 at 599.543 kb on - strand, within Synpcc7942_0610 at 599.559 kb on - strand, within Synpcc7942_0610 at 599.559 kb on - strand, within Synpcc7942_0610 at 599.559 kb on - strand, within Synpcc7942_0610 at 599.593 kb on - strand, within Synpcc7942_0610 at 599.615 kb on + strand at 599.616 kb on + strand at 599.660 kb on + strand at 599.660 kb on + strand at 599.688 kb on + strand at 599.700 kb on + strand at 599.721 kb on - strand at 599.792 kb on - strand at 599.839 kb on - strand at 599.845 kb on + strand at 599.905 kb on + strand at 599.905 kb on + strand at 599.905 kb on + strand at 599.913 kb on - strand at 599.913 kb on - strand at 599.913 kb on - strand at 599.913 kb on - strand at 599.948 kb on + strand at 599.991 kb on - strand at 600.003 kb on - strand at 600.010 kb on - strand at 600.010 kb on - strand at 600.012 kb on + strand at 600.012 kb on + strand at 600.012 kb on + strand at 600.012 kb on + strand at 600.020 kb on - strand at 600.020 kb on - strand at 600.020 kb on - strand at 600.020 kb on - strand at 600.026 kb on + strand at 600.027 kb on - strand at 600.027 kb on - strand at 600.027 kb on - strand at 600.049 kb on + strand at 600.055 kb on + strand, within mutS at 600.090 kb on - strand, within mutS at 600.090 kb on - strand, within mutS at 600.090 kb on - strand, within mutS at 600.110 kb on - strand, within mutS at 600.112 kb on + strand, within mutS at 600.177 kb on - strand, within mutS at 600.199 kb on - strand, within mutS at 600.212 kb on - strand, within mutS at 600.212 kb on - strand, within mutS at 600.247 kb on - strand, within mutS at 600.249 kb on - strand, within mutS at 600.267 kb on - strand, within mutS at 600.283 kb on + strand, within mutS at 600.285 kb on + strand, within mutS at 600.285 kb on + strand, within mutS at 600.291 kb on - strand, within mutS at 600.291 kb on - strand, within mutS at 600.325 kb on + strand, within mutS at 600.344 kb on - strand, within mutS at 600.368 kb on - strand, within mutS at 600.417 kb on + strand, within mutS at 600.432 kb on + strand, within mutS at 600.440 kb on - strand, within mutS at 600.464 kb on + strand, within mutS at 600.464 kb on + strand, within mutS at 600.488 kb on + strand, within mutS at 600.488 kb on + strand, within mutS at 600.494 kb on - strand, within mutS at 600.496 kb on - strand, within mutS at 600.496 kb on - strand, within mutS at 600.496 kb on - strand, within mutS at 600.496 kb on - strand, within mutS at 600.496 kb on - strand, within mutS at 600.496 kb on - strand, within mutS at 600.496 kb on - strand, within mutS at 600.503 kb on + strand, within mutS at 600.503 kb on + strand, within mutS at 600.511 kb on - strand, within mutS at 600.542 kb on - strand, within mutS at 600.550 kb on + strand, within mutS at 600.553 kb on - strand at 600.558 kb on + strand, within mutS at 600.566 kb on - strand at 600.566 kb on - strand, within mutS at 600.566 kb on - strand, within mutS at 600.620 kb on - strand, within mutS at 600.643 kb on - strand, within mutS at 600.743 kb on + strand, within mutS at 600.803 kb on + strand at 600.803 kb on + strand, within mutS at 600.823 kb on + strand, within mutS at 600.874 kb on + strand, within mutS at 600.889 kb on - strand, within mutS at 600.937 kb on - strand, within mutS at 600.937 kb on - strand, within mutS at 600.948 kb on + strand, within mutS at 600.953 kb on + strand, within mutS at 600.953 kb on + strand, within mutS at 600.956 kb on - strand, within mutS at 600.956 kb on - strand, within mutS at 600.956 kb on - strand, within mutS at 600.961 kb on - strand, within mutS at 600.982 kb on - strand, within mutS at 600.985 kb on + strand, within mutS at 601.004 kb on + strand, within mutS at 601.005 kb on + strand, within mutS at 601.006 kb on - strand, within mutS at 601.122 kb on + strand, within mutS at 601.130 kb on - strand, within mutS at 601.130 kb on - strand, within mutS at 601.152 kb on + strand, within mutS at 601.171 kb on + strand, within mutS at 601.272 kb on + strand, within mutS at 601.272 kb on + strand, within mutS at 601.272 kb on + strand, within mutS at 601.280 kb on - strand, within mutS at 601.280 kb on - strand, within mutS at 601.295 kb on + strand at 601.298 kb on - strand, within mutS at 601.298 kb on - strand, within mutS at 601.333 kb on - strand, within mutS at 601.355 kb on - strand, within mutS at 601.426 kb on - strand, within mutS at 601.453 kb on - strand at 601.453 kb on - strand, within mutS at 601.476 kb on + strand, within mutS at 601.479 kb on - strand, within mutS at 601.515 kb on + strand, within mutS at 601.515 kb on + strand, within mutS at 601.515 kb on + strand, within mutS at 601.523 kb on - strand, within mutS at 601.533 kb on - strand, within mutS at 601.571 kb on - strand, within mutS at 601.617 kb on + strand, within mutS at 601.630 kb on + strand, within mutS at 601.638 kb on - strand, within mutS at 601.648 kb on - strand, within mutS at 601.686 kb on + strand, within mutS at 601.717 kb on + strand, within mutS at 601.779 kb on + strand, within mutS at 601.793 kb on - strand, within mutS at 601.823 kb on + strand, within mutS at 601.823 kb on + strand, within mutS at 601.831 kb on - strand, within mutS at 601.844 kb on + strand, within mutS at 601.885 kb on - strand, within mutS at 601.923 kb on + strand, within mutS at 601.931 kb on - strand, within mutS at 601.981 kb on + strand at 601.982 kb on + strand at 601.990 kb on - strand at 601.990 kb on - strand at 601.990 kb on - strand at 602.008 kb on - strand at 602.038 kb on - strand at 602.112 kb on + strand at 602.154 kb on + strand at 602.192 kb on + strand at 602.199 kb on + strand at 602.200 kb on + strand at 602.200 kb on + strand at 602.202 kb on - strand at 602.208 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 25 mM remove 598,844 + Synpcc7942_0610 0.48 +1.4 598,869 + Synpcc7942_0610 0.50 +0.6 598,895 - Synpcc7942_0610 0.51 -2.3 598,984 - Synpcc7942_0610 0.56 +2.8 599,003 + Synpcc7942_0610 0.57 -0.8 599,004 + Synpcc7942_0610 0.57 +4.0 599,008 + Synpcc7942_0610 0.57 +1.2 599,014 - Synpcc7942_0610 0.58 +1.7 599,014 - Synpcc7942_0610 0.58 -0.0 599,028 - Synpcc7942_0610 0.58 +0.4 599,073 - Synpcc7942_0610 0.61 +1.2 599,092 + Synpcc7942_0610 0.62 +0.6 599,097 + Synpcc7942_0610 0.62 -1.0 599,098 - Synpcc7942_0610 0.62 -0.8 599,098 - Synpcc7942_0610 0.62 +0.2 599,098 - Synpcc7942_0610 0.62 -1.8 599,112 + Synpcc7942_0610 0.63 -2.8 599,120 - Synpcc7942_0610 0.64 +0.2 599,132 - Synpcc7942_0610 0.64 -3.1 599,134 + Synpcc7942_0610 0.64 +1.8 599,141 + Synpcc7942_0610 0.65 +1.3 599,141 + Synpcc7942_0610 0.65 +2.6 599,142 - Synpcc7942_0610 0.65 -0.4 599,149 - Synpcc7942_0610 0.65 +1.9 599,149 - Synpcc7942_0610 0.65 -0.8 599,149 - Synpcc7942_0610 0.65 -0.8 599,149 - Synpcc7942_0610 0.65 -0.8 599,149 - Synpcc7942_0610 0.65 +2.0 599,149 - Synpcc7942_0610 0.65 +0.0 599,149 - Synpcc7942_0610 0.65 +1.4 599,149 - Synpcc7942_0610 0.65 -0.8 599,156 - Synpcc7942_0610 0.66 +2.5 599,202 + Synpcc7942_0610 0.68 +2.0 599,372 + Synpcc7942_0610 0.78 +2.7 599,380 - Synpcc7942_0610 0.78 -1.8 599,422 - Synpcc7942_0610 0.80 -2.3 599,481 + Synpcc7942_0610 0.84 +1.9 599,489 - Synpcc7942_0610 0.84 +0.2 599,489 - Synpcc7942_0610 0.84 +3.2 599,489 - Synpcc7942_0610 0.84 -0.8 599,503 + Synpcc7942_0610 0.85 +1.9 599,511 - Synpcc7942_0610 0.85 -0.1 599,521 - Synpcc7942_0610 0.86 +3.0 599,523 - Synpcc7942_0610 0.86 +2.3 599,528 + Synpcc7942_0610 0.86 -2.3 599,528 + Synpcc7942_0610 0.86 -0.8 599,528 + Synpcc7942_0610 0.86 -2.3 599,528 + Synpcc7942_0610 0.86 +2.1 599,536 - Synpcc7942_0610 0.87 +2.8 599,536 - Synpcc7942_0610 0.87 +2.7 599,536 - Synpcc7942_0610 0.87 -0.8 599,536 - Synpcc7942_0610 0.87 +0.9 599,543 - Synpcc7942_0610 0.87 -0.8 599,559 - Synpcc7942_0610 0.88 +0.1 599,559 - Synpcc7942_0610 0.88 +1.4 599,559 - Synpcc7942_0610 0.88 +2.0 599,593 - Synpcc7942_0610 0.90 +2.5 599,615 + +0.2 599,616 + -0.8 599,660 + -3.6 599,660 + -0.3 599,688 + -1.8 599,700 + -2.3 599,721 - +1.9 599,792 - +1.7 599,839 - +0.8 599,845 + +1.8 599,905 + -2.3 599,905 + -2.5 599,905 + -2.8 599,913 - -3.6 599,913 - -0.8 599,913 - -2.3 599,913 - +0.5 599,948 + -0.8 599,991 - -1.2 600,003 - -0.8 600,010 - -1.8 600,010 - -1.3 600,012 + -0.8 600,012 + -1.8 600,012 + -2.8 600,012 + +0.1 600,020 - -2.3 600,020 - +2.0 600,020 - -1.8 600,020 - -1.3 600,026 + +2.7 600,027 - +1.6 600,027 - -1.5 600,027 - -2.3 600,049 + -1.8 600,055 + mutS Synpcc7942_0611 0.10 -1.3 600,090 - mutS Synpcc7942_0611 0.12 -2.3 600,090 - mutS Synpcc7942_0611 0.12 -0.2 600,090 - mutS Synpcc7942_0611 0.12 -2.3 600,110 - mutS Synpcc7942_0611 0.12 -2.6 600,112 + mutS Synpcc7942_0611 0.12 -1.3 600,177 - mutS Synpcc7942_0611 0.15 -2.1 600,199 - mutS Synpcc7942_0611 0.16 +0.2 600,212 - mutS Synpcc7942_0611 0.17 +0.9 600,212 - mutS Synpcc7942_0611 0.17 -0.2 600,247 - mutS Synpcc7942_0611 0.18 -1.8 600,249 - mutS Synpcc7942_0611 0.18 -2.0 600,267 - mutS Synpcc7942_0611 0.19 +0.9 600,283 + mutS Synpcc7942_0611 0.20 -0.8 600,285 + mutS Synpcc7942_0611 0.20 -0.8 600,285 + mutS Synpcc7942_0611 0.20 -1.0 600,291 - mutS Synpcc7942_0611 0.20 -2.3 600,291 - mutS Synpcc7942_0611 0.20 -0.3 600,325 + mutS Synpcc7942_0611 0.21 -2.3 600,344 - mutS Synpcc7942_0611 0.22 -1.2 600,368 - mutS Synpcc7942_0611 0.23 +1.0 600,417 + mutS Synpcc7942_0611 0.25 -1.2 600,432 + mutS Synpcc7942_0611 0.26 +0.2 600,440 - mutS Synpcc7942_0611 0.26 -2.1 600,464 + mutS Synpcc7942_0611 0.27 -2.3 600,464 + mutS Synpcc7942_0611 0.27 +0.7 600,488 + mutS Synpcc7942_0611 0.28 -1.3 600,488 + mutS Synpcc7942_0611 0.28 -3.1 600,494 - mutS Synpcc7942_0611 0.28 -0.8 600,496 - mutS Synpcc7942_0611 0.28 -2.8 600,496 - mutS Synpcc7942_0611 0.28 +0.8 600,496 - mutS Synpcc7942_0611 0.28 -1.8 600,496 - mutS Synpcc7942_0611 0.28 -2.8 600,496 - mutS Synpcc7942_0611 0.28 -1.8 600,496 - mutS Synpcc7942_0611 0.28 -1.8 600,496 - mutS Synpcc7942_0611 0.28 -0.8 600,503 + mutS Synpcc7942_0611 0.29 -0.5 600,503 + mutS Synpcc7942_0611 0.29 +1.7 600,511 - mutS Synpcc7942_0611 0.29 +1.2 600,542 - mutS Synpcc7942_0611 0.30 +0.4 600,550 + mutS Synpcc7942_0611 0.31 +0.8 600,553 - +0.2 600,558 + mutS Synpcc7942_0611 0.31 +0.2 600,566 - -0.8 600,566 - mutS Synpcc7942_0611 0.31 -0.2 600,566 - mutS Synpcc7942_0611 0.31 -1.8 600,620 - mutS Synpcc7942_0611 0.34 -0.5 600,643 - mutS Synpcc7942_0611 0.35 -1.8 600,743 + mutS Synpcc7942_0611 0.39 -2.3 600,803 + -0.8 600,803 + mutS Synpcc7942_0611 0.41 -0.6 600,823 + mutS Synpcc7942_0611 0.42 -0.2 600,874 + mutS Synpcc7942_0611 0.44 -1.8 600,889 - mutS Synpcc7942_0611 0.45 -1.8 600,937 - mutS Synpcc7942_0611 0.47 -3.6 600,937 - mutS Synpcc7942_0611 0.47 -1.3 600,948 + mutS Synpcc7942_0611 0.47 -2.8 600,953 + mutS Synpcc7942_0611 0.48 -2.3 600,953 + mutS Synpcc7942_0611 0.48 -2.1 600,956 - mutS Synpcc7942_0611 0.48 +0.8 600,956 - mutS Synpcc7942_0611 0.48 -0.8 600,956 - mutS Synpcc7942_0611 0.48 -1.8 600,961 - mutS Synpcc7942_0611 0.48 -4.3 600,982 - mutS Synpcc7942_0611 0.49 -0.8 600,985 + mutS Synpcc7942_0611 0.49 -0.5 601,004 + mutS Synpcc7942_0611 0.50 +0.1 601,005 + mutS Synpcc7942_0611 0.50 -2.3 601,006 - mutS Synpcc7942_0611 0.50 -0.8 601,122 + mutS Synpcc7942_0611 0.55 -1.8 601,130 - mutS Synpcc7942_0611 0.55 -2.8 601,130 - mutS Synpcc7942_0611 0.55 -2.3 601,152 + mutS Synpcc7942_0611 0.56 -1.8 601,171 + mutS Synpcc7942_0611 0.57 -0.8 601,272 + mutS Synpcc7942_0611 0.61 +0.8 601,272 + mutS Synpcc7942_0611 0.61 +0.2 601,272 + mutS Synpcc7942_0611 0.61 -0.4 601,280 - mutS Synpcc7942_0611 0.61 -0.8 601,280 - mutS Synpcc7942_0611 0.61 -0.8 601,295 + -0.8 601,298 - mutS Synpcc7942_0611 0.62 -2.3 601,298 - mutS Synpcc7942_0611 0.62 +0.5 601,333 - mutS Synpcc7942_0611 0.63 -0.8 601,355 - mutS Synpcc7942_0611 0.64 -0.2 601,426 - mutS Synpcc7942_0611 0.67 -3.1 601,453 - -1.8 601,453 - mutS Synpcc7942_0611 0.69 -0.2 601,476 + mutS Synpcc7942_0611 0.69 -1.8 601,479 - mutS Synpcc7942_0611 0.70 +1.7 601,515 + mutS Synpcc7942_0611 0.71 -0.8 601,515 + mutS Synpcc7942_0611 0.71 -0.8 601,515 + mutS Synpcc7942_0611 0.71 -0.8 601,523 - mutS Synpcc7942_0611 0.71 -2.1 601,533 - mutS Synpcc7942_0611 0.72 -2.3 601,571 - mutS Synpcc7942_0611 0.73 -0.8 601,617 + mutS Synpcc7942_0611 0.75 -0.5 601,630 + mutS Synpcc7942_0611 0.76 -0.6 601,638 - mutS Synpcc7942_0611 0.76 -2.1 601,648 - mutS Synpcc7942_0611 0.77 +0.2 601,686 + mutS Synpcc7942_0611 0.78 +0.8 601,717 + mutS Synpcc7942_0611 0.80 -3.1 601,779 + mutS Synpcc7942_0611 0.82 -0.8 601,793 - mutS Synpcc7942_0611 0.83 -2.3 601,823 + mutS Synpcc7942_0611 0.84 -1.8 601,823 + mutS Synpcc7942_0611 0.84 -3.1 601,831 - mutS Synpcc7942_0611 0.84 +0.8 601,844 + mutS Synpcc7942_0611 0.85 -2.8 601,885 - mutS Synpcc7942_0611 0.87 -0.8 601,923 + mutS Synpcc7942_0611 0.88 -0.6 601,931 - mutS Synpcc7942_0611 0.88 -1.3 601,981 + -3.1 601,982 + -0.2 601,990 - -2.3 601,990 - +0.9 601,990 - -1.3 602,008 - -0.8 602,038 - -3.6 602,112 + -2.3 602,154 + +4.2 602,192 + +3.4 602,199 + -3.1 602,200 + +2.2 602,200 + -3.1 602,202 - -3.1 602,208 - -0.8
Or see this region's nucleotide sequence