Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0263

Experiment: sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlysA and Synpcc7942_0263 are separated by 79 nucleotidesSynpcc7942_0263 and uppS overlap by 4 nucleotidesuppS and Synpcc7942_0265 are separated by 12 nucleotides Synpcc7942_0262: lysA - diaminopimelate decarboxylase, at 259,226 to 260,620 lysA Synpcc7942_0263: Synpcc7942_0263 - Protein of unknown function DUF147, at 260,700 to 261,620 _0263 Synpcc7942_0264: uppS - Undecaprenyl pyrophosphate synthetase, at 261,617 to 262,372 uppS Synpcc7942_0265: Synpcc7942_0265 - hypothetical protein, at 262,385 to 262,660 _0265 Position (kb) 260 261 262Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 260.601 kb on + strandat 260.601 kb on + strandat 260.655 kb on + strandat 260.663 kb on - strandat 260.663 kb on - strandat 260.667 kb on + strandat 260.667 kb on + strandat 260.667 kb on + strandat 260.667 kb on + strandat 260.675 kb on - strandat 260.675 kb on - strandat 260.675 kb on - strandat 260.675 kb on - strandat 260.675 kb on - strandat 260.690 kb on + strandat 260.690 kb on + strandat 260.690 kb on + strandat 260.696 kb on + strandat 260.698 kb on - strandat 260.704 kb on - strandat 260.834 kb on + strand, within Synpcc7942_0263at 260.844 kb on + strand, within Synpcc7942_0263at 260.849 kb on + strand, within Synpcc7942_0263at 260.859 kb on + strand, within Synpcc7942_0263at 260.904 kb on - strand, within Synpcc7942_0263at 260.951 kb on + strand, within Synpcc7942_0263at 260.951 kb on - strand, within Synpcc7942_0263at 261.146 kb on - strand, within Synpcc7942_0263at 261.195 kb on + strand, within Synpcc7942_0263at 261.209 kb on + strand, within Synpcc7942_0263at 261.289 kb on + strand, within Synpcc7942_0263at 261.304 kb on + strand, within Synpcc7942_0263at 262.367 kb on + strandat 262.381 kb on - strandat 262.383 kb on + strandat 262.386 kb on - strandat 262.397 kb on - strandat 262.417 kb on + strand, within Synpcc7942_0265at 262.422 kb on + strand, within Synpcc7942_0265at 262.422 kb on - strand, within Synpcc7942_0265at 262.453 kb on + strand, within Synpcc7942_0265at 262.454 kb on + strand, within Synpcc7942_0265at 262.462 kb on - strand, within Synpcc7942_0265at 262.479 kb on + strand, within Synpcc7942_0265at 262.503 kb on + strand, within Synpcc7942_0265at 262.503 kb on + strand, within Synpcc7942_0265at 262.514 kb on + strand, within Synpcc7942_0265at 262.535 kb on + strand, within Synpcc7942_0265at 262.545 kb on + strand, within Synpcc7942_0265at 262.553 kb on + strand, within Synpcc7942_0265at 262.561 kb on - strand, within Synpcc7942_0265

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 25 mM
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260,601 + +1.7
260,601 + -0.1
260,655 + +0.3
260,663 - -1.7
260,663 - -0.4
260,667 + -2.7
260,667 + +1.9
260,667 + -1.7
260,667 + +0.7
260,675 - -2.3
260,675 - +0.9
260,675 - -0.7
260,675 - -3.7
260,675 - -0.7
260,690 + +2.4
260,690 + +0.6
260,690 + +2.1
260,696 + +2.7
260,698 - +1.6
260,704 - +2.7
260,834 + Synpcc7942_0263 0.15 -0.7
260,844 + Synpcc7942_0263 0.16 -2.7
260,849 + Synpcc7942_0263 0.16 -3.0
260,859 + Synpcc7942_0263 0.17 +0.9
260,904 - Synpcc7942_0263 0.22 +2.9
260,951 + Synpcc7942_0263 0.27 -3.0
260,951 - Synpcc7942_0263 0.27 -0.7
261,146 - Synpcc7942_0263 0.48 -0.7
261,195 + Synpcc7942_0263 0.54 -1.7
261,209 + Synpcc7942_0263 0.55 -1.7
261,289 + Synpcc7942_0263 0.64 -0.3
261,304 + Synpcc7942_0263 0.66 -0.7
262,367 + -0.1
262,381 - -0.1
262,383 + +0.3
262,386 - +1.7
262,397 - +0.5
262,417 + Synpcc7942_0265 0.12 -0.7
262,422 + Synpcc7942_0265 0.13 +2.6
262,422 - Synpcc7942_0265 0.13 +0.8
262,453 + Synpcc7942_0265 0.25 +1.8
262,454 + Synpcc7942_0265 0.25 -0.8
262,462 - Synpcc7942_0265 0.28 +3.7
262,479 + Synpcc7942_0265 0.34 +3.2
262,503 + Synpcc7942_0265 0.43 -0.2
262,503 + Synpcc7942_0265 0.43 +1.3
262,514 + Synpcc7942_0265 0.47 +1.7
262,535 + Synpcc7942_0265 0.54 +2.3
262,545 + Synpcc7942_0265 0.58 -1.7
262,553 + Synpcc7942_0265 0.61 +3.3
262,561 - Synpcc7942_0265 0.64 +1.2

Or see this region's nucleotide sequence