Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03107 and SMc03106 are separated by 45 nucleotides SMc03106 and SMc03105 are separated by 160 nucleotides SMc03105 and SMc03104 are separated by 168 nucleotides
SMc03107: SMc03107 - hypothetical protein, at 3,234,292 to 3,235,014
SMc03107
SMc03106: SMc03106 - hypothetical protein, at 3,235,060 to 3,235,785
SMc03106
SMc03105: SMc03105 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 3,235,946 to 3,237,121
SMc03105
SMc03104: SMc03104 - 5-aminolevulinate synthase, at 3,237,290 to 3,238,507
SMc03104
Position (kb)
3235
3236
3237
3238 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3234.953 kb on - strand at 3235.025 kb on + strand at 3235.025 kb on + strand at 3235.061 kb on + strand at 3235.061 kb on + strand at 3235.149 kb on + strand, within SMc03106 at 3235.149 kb on + strand, within SMc03106 at 3235.150 kb on - strand, within SMc03106 at 3235.150 kb on - strand, within SMc03106 at 3235.150 kb on - strand, within SMc03106 at 3235.150 kb on - strand, within SMc03106 at 3235.151 kb on + strand, within SMc03106 at 3235.259 kb on + strand, within SMc03106 at 3235.259 kb on + strand, within SMc03106 at 3235.260 kb on - strand, within SMc03106 at 3235.293 kb on - strand, within SMc03106 at 3235.374 kb on + strand, within SMc03106 at 3235.374 kb on + strand, within SMc03106 at 3235.375 kb on - strand, within SMc03106 at 3235.381 kb on + strand, within SMc03106 at 3235.382 kb on - strand, within SMc03106 at 3235.382 kb on - strand, within SMc03106 at 3235.382 kb on - strand, within SMc03106 at 3235.501 kb on + strand, within SMc03106 at 3235.601 kb on + strand, within SMc03106 at 3235.602 kb on - strand, within SMc03106 at 3235.663 kb on + strand, within SMc03106 at 3235.664 kb on - strand, within SMc03106 at 3235.835 kb on - strand at 3235.853 kb on - strand at 3235.863 kb on + strand at 3235.864 kb on - strand at 3235.899 kb on + strand at 3235.910 kb on + strand at 3235.932 kb on + strand at 3237.127 kb on + strand at 3237.127 kb on + strand at 3237.127 kb on + strand at 3237.127 kb on + strand at 3237.128 kb on - strand at 3237.128 kb on - strand at 3237.128 kb on - strand at 3237.222 kb on + strand at 3237.291 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 3,234,953 - -0.7 3,235,025 + -1.1 3,235,025 + +2.8 3,235,061 + +0.4 3,235,061 + -0.2 3,235,149 + SMc03106 0.12 +1.0 3,235,149 + SMc03106 0.12 -3.2 3,235,150 - SMc03106 0.12 -1.3 3,235,150 - SMc03106 0.12 +0.4 3,235,150 - SMc03106 0.12 +0.1 3,235,150 - SMc03106 0.12 -1.7 3,235,151 + SMc03106 0.13 +1.2 3,235,259 + SMc03106 0.27 +1.6 3,235,259 + SMc03106 0.27 +0.8 3,235,260 - SMc03106 0.28 -0.7 3,235,293 - SMc03106 0.32 -1.1 3,235,374 + SMc03106 0.43 -0.2 3,235,374 + SMc03106 0.43 -2.5 3,235,375 - SMc03106 0.43 -0.4 3,235,381 + SMc03106 0.44 -2.8 3,235,382 - SMc03106 0.44 -1.7 3,235,382 - SMc03106 0.44 +0.2 3,235,382 - SMc03106 0.44 -2.7 3,235,501 + SMc03106 0.61 -1.9 3,235,601 + SMc03106 0.75 -0.9 3,235,602 - SMc03106 0.75 +1.4 3,235,663 + SMc03106 0.83 +1.4 3,235,664 - SMc03106 0.83 +1.6 3,235,835 - -1.4 3,235,853 - +0.1 3,235,863 + +0.5 3,235,864 - -2.7 3,235,899 + +0.1 3,235,910 + -3.6 3,235,932 + -0.2 3,237,127 + +0.1 3,237,127 + +0.1 3,237,127 + +0.5 3,237,127 + +0.3 3,237,128 - +1.1 3,237,128 - -1.1 3,237,128 - -0.2 3,237,222 + -1.4 3,237,291 + +0.2
Or see this region's nucleotide sequence