Strain Fitness in Sinorhizobium meliloti 1021 around SMc02828

Experiment: L-Leucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02827 and SMc02828 are separated by 236 nucleotidesSMc02828 and SMc02829 are separated by 10 nucleotides SMc02827: SMc02827 - hypothetical protein, at 174,045 to 174,899 SMc02827 SMc02828: SMc02828 - hydroxyacid dehydrogenase, at 175,136 to 176,095 SMc02828 SMc02829: SMc02829 - ABC transporter ATP-binding protein, at 176,106 to 177,734 SMc02829 Position (kb) 175 176 177Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 174.294 kb on + strandat 174.303 kb on + strand, within SMc02827at 174.304 kb on - strand, within SMc02827at 174.550 kb on - strand, within SMc02827at 174.835 kb on + strandat 174.835 kb on + strandat 174.867 kb on + strandat 174.867 kb on + strandat 174.867 kb on + strandat 175.033 kb on + strandat 175.033 kb on + strandat 175.034 kb on - strandat 175.161 kb on - strandat 175.161 kb on - strandat 175.161 kb on - strandat 175.161 kb on - strandat 175.264 kb on - strand, within SMc02828at 175.264 kb on - strand, within SMc02828at 175.264 kb on - strand, within SMc02828at 175.264 kb on - strand, within SMc02828at 175.472 kb on - strand, within SMc02828at 175.628 kb on - strand, within SMc02828at 175.964 kb on + strand, within SMc02828at 176.107 kb on + strandat 176.107 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
remove
174,294 + +0.3
174,303 + SMc02827 0.30 -1.4
174,304 - SMc02827 0.30 +0.3
174,550 - SMc02827 0.59 +0.3
174,835 + +1.4
174,835 + +1.2
174,867 + -1.7
174,867 + +0.2
174,867 + +0.8
175,033 + -0.7
175,033 + +0.2
175,034 - -0.7
175,161 - +1.9
175,161 - -0.0
175,161 - -2.4
175,161 - -0.9
175,264 - SMc02828 0.13 -3.2
175,264 - SMc02828 0.13 -0.8
175,264 - SMc02828 0.13 -0.0
175,264 - SMc02828 0.13 +0.0
175,472 - SMc02828 0.35 -1.2
175,628 - SMc02828 0.51 +0.3
175,964 + SMc02828 0.86 -4.1
176,107 + +2.6
176,107 + -0.6

Or see this region's nucleotide sequence