Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02356 and SMc02357 are separated by 51 nucleotides SMc02357 and SMc02358 overlap by 8 nucleotides SMc02358 and SMc02359 are separated by 3 nucleotides
SMc02356: SMc02356 - branched chain amino acid ABC transporter periplasmic protein, at 2,777,494 to 2,778,666
SMc02356
SMc02357: SMc02357 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein, at 2,778,718 to 2,779,452
SMc02357
SMc02358: SMc02358 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein, at 2,779,445 to 2,780,152
SMc02358
SMc02359: SMc02359 - high-affinity branched-chain amino acid ABC transporter permease, at 2,780,156 to 2,781,046
SMc02359
Position (kb)
2778
2779
2780 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2777.934 kb on + strand, within SMc02356 at 2777.995 kb on + strand, within SMc02356 at 2777.996 kb on - strand, within SMc02356 at 2777.996 kb on - strand, within SMc02356 at 2777.996 kb on - strand, within SMc02356 at 2777.996 kb on - strand, within SMc02356 at 2778.022 kb on + strand, within SMc02356 at 2778.022 kb on + strand, within SMc02356 at 2778.023 kb on - strand, within SMc02356 at 2778.023 kb on - strand, within SMc02356 at 2778.024 kb on + strand, within SMc02356 at 2778.025 kb on - strand, within SMc02356 at 2778.025 kb on - strand, within SMc02356 at 2778.025 kb on - strand, within SMc02356 at 2778.025 kb on - strand, within SMc02356 at 2778.097 kb on + strand, within SMc02356 at 2778.097 kb on + strand, within SMc02356 at 2778.098 kb on - strand, within SMc02356 at 2778.098 kb on - strand, within SMc02356 at 2778.098 kb on - strand, within SMc02356 at 2778.185 kb on - strand, within SMc02356 at 2778.262 kb on + strand, within SMc02356 at 2778.262 kb on + strand, within SMc02356 at 2778.316 kb on + strand, within SMc02356 at 2778.316 kb on + strand, within SMc02356 at 2778.316 kb on + strand, within SMc02356 at 2778.317 kb on - strand, within SMc02356 at 2778.317 kb on - strand, within SMc02356 at 2778.330 kb on + strand, within SMc02356 at 2778.383 kb on - strand, within SMc02356 at 2778.383 kb on - strand, within SMc02356 at 2778.439 kb on - strand, within SMc02356 at 2778.640 kb on - strand at 2778.657 kb on + strand at 2778.984 kb on - strand, within SMc02357 at 2778.984 kb on - strand, within SMc02357 at 2778.999 kb on + strand, within SMc02357 at 2778.999 kb on + strand, within SMc02357 at 2778.999 kb on + strand, within SMc02357 at 2778.999 kb on + strand, within SMc02357 at 2779.000 kb on - strand, within SMc02357 at 2779.138 kb on + strand, within SMc02357 at 2779.138 kb on + strand, within SMc02357 at 2779.139 kb on - strand, within SMc02357 at 2779.139 kb on - strand, within SMc02357 at 2779.139 kb on - strand, within SMc02357 at 2779.423 kb on + strand at 2779.423 kb on + strand at 2779.423 kb on + strand at 2779.424 kb on - strand at 2779.455 kb on + strand at 2779.456 kb on - strand at 2779.476 kb on - strand at 2779.476 kb on - strand at 2780.138 kb on + strand at 2780.139 kb on - strand at 2780.139 kb on - strand at 2780.208 kb on - strand at 2780.208 kb on - strand at 2780.240 kb on + strand at 2780.240 kb on + strand at 2780.241 kb on - strand at 2780.241 kb on - strand at 2780.270 kb on + strand, within SMc02359 at 2780.298 kb on - strand, within SMc02359 at 2780.393 kb on + strand, within SMc02359 at 2780.394 kb on - strand, within SMc02359 at 2780.394 kb on - strand, within SMc02359
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 2,777,934 + SMc02356 0.38 +0.5 2,777,995 + SMc02356 0.43 -1.2 2,777,996 - SMc02356 0.43 -0.2 2,777,996 - SMc02356 0.43 +0.5 2,777,996 - SMc02356 0.43 +0.2 2,777,996 - SMc02356 0.43 -4.4 2,778,022 + SMc02356 0.45 +0.3 2,778,022 + SMc02356 0.45 +1.4 2,778,023 - SMc02356 0.45 -2.0 2,778,023 - SMc02356 0.45 +0.2 2,778,024 + SMc02356 0.45 -1.1 2,778,025 - SMc02356 0.45 +1.6 2,778,025 - SMc02356 0.45 -2.9 2,778,025 - SMc02356 0.45 +0.0 2,778,025 - SMc02356 0.45 -3.3 2,778,097 + SMc02356 0.51 +1.0 2,778,097 + SMc02356 0.51 +0.8 2,778,098 - SMc02356 0.51 -0.0 2,778,098 - SMc02356 0.51 -0.0 2,778,098 - SMc02356 0.51 -0.0 2,778,185 - SMc02356 0.59 -0.0 2,778,262 + SMc02356 0.65 +0.0 2,778,262 + SMc02356 0.65 -0.0 2,778,316 + SMc02356 0.70 +0.8 2,778,316 + SMc02356 0.70 -2.4 2,778,316 + SMc02356 0.70 -0.2 2,778,317 - SMc02356 0.70 -0.1 2,778,317 - SMc02356 0.70 +0.0 2,778,330 + SMc02356 0.71 -3.5 2,778,383 - SMc02356 0.76 +0.9 2,778,383 - SMc02356 0.76 +0.5 2,778,439 - SMc02356 0.81 +0.1 2,778,640 - +0.7 2,778,657 + -2.6 2,778,984 - SMc02357 0.36 +0.2 2,778,984 - SMc02357 0.36 -0.4 2,778,999 + SMc02357 0.38 +1.4 2,778,999 + SMc02357 0.38 +0.5 2,778,999 + SMc02357 0.38 -0.5 2,778,999 + SMc02357 0.38 -0.2 2,779,000 - SMc02357 0.38 -0.3 2,779,138 + SMc02357 0.57 +1.0 2,779,138 + SMc02357 0.57 -2.5 2,779,139 - SMc02357 0.57 +0.7 2,779,139 - SMc02357 0.57 +0.3 2,779,139 - SMc02357 0.57 +2.4 2,779,423 + -0.5 2,779,423 + +0.7 2,779,423 + -2.2 2,779,424 - -0.7 2,779,455 + +0.4 2,779,456 - -0.3 2,779,476 - +0.9 2,779,476 - -2.2 2,780,138 + +1.3 2,780,139 - -2.0 2,780,139 - -0.5 2,780,208 - -0.9 2,780,208 - -0.2 2,780,240 + +0.5 2,780,240 + -1.4 2,780,241 - +0.5 2,780,241 - -1.6 2,780,270 + SMc02359 0.13 +1.6 2,780,298 - SMc02359 0.16 -1.1 2,780,393 + SMc02359 0.27 +0.5 2,780,394 - SMc02359 0.27 -1.0 2,780,394 - SMc02359 0.27 +0.1
Or see this region's nucleotide sequence