Strain Fitness in Sinorhizobium meliloti 1021 around SMc02357

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02356 and SMc02357 are separated by 51 nucleotidesSMc02357 and SMc02358 overlap by 8 nucleotidesSMc02358 and SMc02359 are separated by 3 nucleotides SMc02356: SMc02356 - branched chain amino acid ABC transporter periplasmic protein, at 2,777,494 to 2,778,666 SMc02356 SMc02357: SMc02357 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein, at 2,778,718 to 2,779,452 SMc02357 SMc02358: SMc02358 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein, at 2,779,445 to 2,780,152 SMc02358 SMc02359: SMc02359 - high-affinity branched-chain amino acid ABC transporter permease, at 2,780,156 to 2,781,046 SMc02359 Position (kb) 2778 2779 2780Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2777.934 kb on + strand, within SMc02356at 2777.995 kb on + strand, within SMc02356at 2777.996 kb on - strand, within SMc02356at 2777.996 kb on - strand, within SMc02356at 2777.996 kb on - strand, within SMc02356at 2777.996 kb on - strand, within SMc02356at 2778.022 kb on + strand, within SMc02356at 2778.022 kb on + strand, within SMc02356at 2778.023 kb on - strand, within SMc02356at 2778.023 kb on - strand, within SMc02356at 2778.024 kb on + strand, within SMc02356at 2778.025 kb on - strand, within SMc02356at 2778.025 kb on - strand, within SMc02356at 2778.025 kb on - strand, within SMc02356at 2778.025 kb on - strand, within SMc02356at 2778.097 kb on + strand, within SMc02356at 2778.097 kb on + strand, within SMc02356at 2778.098 kb on - strand, within SMc02356at 2778.098 kb on - strand, within SMc02356at 2778.098 kb on - strand, within SMc02356at 2778.185 kb on - strand, within SMc02356at 2778.262 kb on + strand, within SMc02356at 2778.262 kb on + strand, within SMc02356at 2778.316 kb on + strand, within SMc02356at 2778.316 kb on + strand, within SMc02356at 2778.316 kb on + strand, within SMc02356at 2778.317 kb on - strand, within SMc02356at 2778.317 kb on - strand, within SMc02356at 2778.330 kb on + strand, within SMc02356at 2778.383 kb on - strand, within SMc02356at 2778.383 kb on - strand, within SMc02356at 2778.439 kb on - strand, within SMc02356at 2778.640 kb on - strandat 2778.657 kb on + strandat 2778.984 kb on - strand, within SMc02357at 2778.984 kb on - strand, within SMc02357at 2778.999 kb on + strand, within SMc02357at 2778.999 kb on + strand, within SMc02357at 2778.999 kb on + strand, within SMc02357at 2778.999 kb on + strand, within SMc02357at 2779.000 kb on - strand, within SMc02357at 2779.138 kb on + strand, within SMc02357at 2779.138 kb on + strand, within SMc02357at 2779.139 kb on - strand, within SMc02357at 2779.139 kb on - strand, within SMc02357at 2779.139 kb on - strand, within SMc02357at 2779.423 kb on + strandat 2779.423 kb on + strandat 2779.423 kb on + strandat 2779.424 kb on - strandat 2779.455 kb on + strandat 2779.456 kb on - strandat 2779.476 kb on - strandat 2779.476 kb on - strandat 2780.138 kb on + strandat 2780.139 kb on - strandat 2780.139 kb on - strandat 2780.208 kb on - strandat 2780.208 kb on - strandat 2780.240 kb on + strandat 2780.240 kb on + strandat 2780.241 kb on - strandat 2780.241 kb on - strandat 2780.270 kb on + strand, within SMc02359at 2780.298 kb on - strand, within SMc02359at 2780.393 kb on + strand, within SMc02359at 2780.394 kb on - strand, within SMc02359at 2780.394 kb on - strand, within SMc02359

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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2,777,934 + SMc02356 0.38 +0.5
2,777,995 + SMc02356 0.43 -1.2
2,777,996 - SMc02356 0.43 -0.2
2,777,996 - SMc02356 0.43 +0.5
2,777,996 - SMc02356 0.43 +0.2
2,777,996 - SMc02356 0.43 -4.4
2,778,022 + SMc02356 0.45 +0.3
2,778,022 + SMc02356 0.45 +1.4
2,778,023 - SMc02356 0.45 -2.0
2,778,023 - SMc02356 0.45 +0.2
2,778,024 + SMc02356 0.45 -1.1
2,778,025 - SMc02356 0.45 +1.6
2,778,025 - SMc02356 0.45 -2.9
2,778,025 - SMc02356 0.45 +0.0
2,778,025 - SMc02356 0.45 -3.3
2,778,097 + SMc02356 0.51 +1.0
2,778,097 + SMc02356 0.51 +0.8
2,778,098 - SMc02356 0.51 -0.0
2,778,098 - SMc02356 0.51 -0.0
2,778,098 - SMc02356 0.51 -0.0
2,778,185 - SMc02356 0.59 -0.0
2,778,262 + SMc02356 0.65 +0.0
2,778,262 + SMc02356 0.65 -0.0
2,778,316 + SMc02356 0.70 +0.8
2,778,316 + SMc02356 0.70 -2.4
2,778,316 + SMc02356 0.70 -0.2
2,778,317 - SMc02356 0.70 -0.1
2,778,317 - SMc02356 0.70 +0.0
2,778,330 + SMc02356 0.71 -3.5
2,778,383 - SMc02356 0.76 +0.9
2,778,383 - SMc02356 0.76 +0.5
2,778,439 - SMc02356 0.81 +0.1
2,778,640 - +0.7
2,778,657 + -2.6
2,778,984 - SMc02357 0.36 +0.2
2,778,984 - SMc02357 0.36 -0.4
2,778,999 + SMc02357 0.38 +1.4
2,778,999 + SMc02357 0.38 +0.5
2,778,999 + SMc02357 0.38 -0.5
2,778,999 + SMc02357 0.38 -0.2
2,779,000 - SMc02357 0.38 -0.3
2,779,138 + SMc02357 0.57 +1.0
2,779,138 + SMc02357 0.57 -2.5
2,779,139 - SMc02357 0.57 +0.7
2,779,139 - SMc02357 0.57 +0.3
2,779,139 - SMc02357 0.57 +2.4
2,779,423 + -0.5
2,779,423 + +0.7
2,779,423 + -2.2
2,779,424 - -0.7
2,779,455 + +0.4
2,779,456 - -0.3
2,779,476 - +0.9
2,779,476 - -2.2
2,780,138 + +1.3
2,780,139 - -2.0
2,780,139 - -0.5
2,780,208 - -0.9
2,780,208 - -0.2
2,780,240 + +0.5
2,780,240 + -1.4
2,780,241 - +0.5
2,780,241 - -1.6
2,780,270 + SMc02359 0.13 +1.6
2,780,298 - SMc02359 0.16 -1.1
2,780,393 + SMc02359 0.27 +0.5
2,780,394 - SMc02359 0.27 -1.0
2,780,394 - SMc02359 0.27 +0.1

Or see this region's nucleotide sequence