Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02326 and SMc02327 are separated by 661 nucleotides SMc02327 and SMc02328 are separated by 106 nucleotides SMc02328 and SMc02286 are separated by 222 nucleotides
SMc02326: SMc02326 - hypothetical protein, at 658,860 to 659,342
SMc02326
SMc02327: SMc02327 - ribonuclease HI protein, at 660,004 to 660,513
SMc02327
SMc02328: SMc02328 - hypothetical protein, at 660,620 to 661,264
SMc02328
SMc02286: SMc02286 - hypothetical protein, at 661,487 to 661,735
SMc02286
Position (kb) 660
661 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 659.048 kb on + strand, within SMc02326 at 659.049 kb on - strand, within SMc02326 at 659.049 kb on - strand, within SMc02326 at 659.049 kb on - strand, within SMc02326 at 659.090 kb on - strand, within SMc02326 at 659.152 kb on + strand, within SMc02326 at 659.180 kb on + strand, within SMc02326 at 659.181 kb on - strand, within SMc02326 at 659.181 kb on - strand, within SMc02326 at 659.187 kb on - strand, within SMc02326 at 659.210 kb on + strand, within SMc02326 at 659.414 kb on + strand at 659.415 kb on - strand at 659.415 kb on - strand at 659.456 kb on + strand at 659.456 kb on + strand at 659.456 kb on + strand at 659.456 kb on + strand at 659.456 kb on + strand at 659.457 kb on - strand at 659.457 kb on - strand at 659.462 kb on + strand at 659.462 kb on + strand at 659.463 kb on - strand at 659.468 kb on + strand at 659.469 kb on - strand at 659.590 kb on + strand at 659.590 kb on + strand at 659.591 kb on - strand at 659.637 kb on - strand at 659.685 kb on + strand at 659.725 kb on + strand at 659.725 kb on + strand at 659.725 kb on + strand at 659.786 kb on + strand at 659.787 kb on - strand at 659.787 kb on - strand at 659.787 kb on - strand at 659.962 kb on + strand at 659.962 kb on + strand at 659.979 kb on + strand at 660.015 kb on + strand at 660.015 kb on + strand at 660.015 kb on + strand at 660.016 kb on - strand at 660.016 kb on - strand at 660.016 kb on - strand at 660.104 kb on - strand, within SMc02327 at 660.104 kb on - strand, within SMc02327 at 660.245 kb on + strand, within SMc02327 at 660.245 kb on + strand, within SMc02327 at 660.245 kb on + strand, within SMc02327 at 660.246 kb on - strand, within SMc02327 at 660.246 kb on - strand, within SMc02327 at 660.246 kb on - strand, within SMc02327 at 660.330 kb on + strand, within SMc02327 at 660.330 kb on + strand, within SMc02327 at 660.330 kb on + strand, within SMc02327 at 660.330 kb on + strand, within SMc02327 at 660.330 kb on + strand, within SMc02327 at 660.331 kb on - strand, within SMc02327 at 660.378 kb on + strand, within SMc02327 at 660.379 kb on - strand, within SMc02327 at 660.406 kb on + strand, within SMc02327 at 660.407 kb on - strand, within SMc02327 at 660.470 kb on + strand at 660.471 kb on - strand at 660.471 kb on - strand at 660.471 kb on - strand at 660.471 kb on - strand at 660.608 kb on + strand at 660.609 kb on - strand at 660.612 kb on + strand at 660.612 kb on + strand at 660.612 kb on + strand at 660.613 kb on - strand at 660.613 kb on - strand at 660.613 kb on - strand at 660.613 kb on - strand at 660.613 kb on - strand at 660.615 kb on + strand at 660.616 kb on - strand at 660.622 kb on - strand at 660.622 kb on - strand at 660.699 kb on + strand, within SMc02328 at 660.700 kb on - strand, within SMc02328 at 660.700 kb on - strand, within SMc02328 at 660.700 kb on - strand, within SMc02328 at 660.795 kb on + strand, within SMc02328 at 661.046 kb on - strand, within SMc02328 at 661.046 kb on - strand, within SMc02328 at 661.076 kb on - strand, within SMc02328 at 661.076 kb on - strand, within SMc02328 at 661.104 kb on + strand, within SMc02328 at 661.257 kb on + strand at 661.258 kb on - strand at 661.258 kb on - strand at 661.396 kb on + strand at 661.396 kb on + strand at 661.396 kb on + strand at 661.409 kb on + strand at 661.409 kb on + strand at 661.475 kb on + strand at 661.476 kb on - strand at 661.476 kb on - strand at 661.476 kb on - strand at 661.476 kb on - strand at 661.489 kb on - strand at 661.489 kb on - strand at 661.489 kb on - strand at 661.495 kb on + strand at 661.495 kb on + strand at 661.501 kb on + strand at 661.501 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 659,048 + SMc02326 0.39 -2.4 659,049 - SMc02326 0.39 -2.2 659,049 - SMc02326 0.39 +1.1 659,049 - SMc02326 0.39 +0.6 659,090 - SMc02326 0.48 -0.6 659,152 + SMc02326 0.60 -3.9 659,180 + SMc02326 0.66 -1.7 659,181 - SMc02326 0.66 +0.5 659,181 - SMc02326 0.66 +1.0 659,187 - SMc02326 0.68 +0.1 659,210 + SMc02326 0.72 -0.7 659,414 + -1.2 659,415 - -3.2 659,415 - -3.6 659,456 + -0.0 659,456 + -2.4 659,456 + +0.1 659,456 + +0.2 659,456 + +0.1 659,457 - -2.1 659,457 - +0.2 659,462 + -2.0 659,462 + +1.8 659,463 - +1.0 659,468 + -2.0 659,469 - -1.1 659,590 + +0.0 659,590 + -1.3 659,591 - -0.9 659,637 - -1.4 659,685 + +0.3 659,725 + -1.0 659,725 + -2.4 659,725 + -1.2 659,786 + -0.7 659,787 - -1.1 659,787 - -1.7 659,787 - -0.9 659,962 + +2.4 659,962 + -0.3 659,979 + -0.7 660,015 + +1.5 660,015 + +2.8 660,015 + -1.0 660,016 - -0.0 660,016 - +2.8 660,016 - -0.0 660,104 - SMc02327 0.20 -2.1 660,104 - SMc02327 0.20 +1.8 660,245 + SMc02327 0.47 -2.8 660,245 + SMc02327 0.47 -1.2 660,245 + SMc02327 0.47 -0.2 660,246 - SMc02327 0.47 +0.3 660,246 - SMc02327 0.47 -0.4 660,246 - SMc02327 0.47 -1.4 660,330 + SMc02327 0.64 +0.4 660,330 + SMc02327 0.64 -3.4 660,330 + SMc02327 0.64 +0.4 660,330 + SMc02327 0.64 +0.8 660,330 + SMc02327 0.64 +0.3 660,331 - SMc02327 0.64 -0.0 660,378 + SMc02327 0.73 -1.4 660,379 - SMc02327 0.74 -0.4 660,406 + SMc02327 0.79 -3.4 660,407 - SMc02327 0.79 -0.9 660,470 + +0.1 660,471 - +0.6 660,471 - +2.2 660,471 - -1.7 660,471 - +0.3 660,608 + -3.4 660,609 - -3.2 660,612 + +0.1 660,612 + +0.9 660,612 + +0.4 660,613 - +1.2 660,613 - +3.1 660,613 - +0.2 660,613 - -1.3 660,613 - +0.4 660,615 + -0.1 660,616 - -1.8 660,622 - -0.8 660,622 - +1.8 660,699 + SMc02328 0.12 +0.3 660,700 - SMc02328 0.12 +0.5 660,700 - SMc02328 0.12 -0.6 660,700 - SMc02328 0.12 +0.3 660,795 + SMc02328 0.27 +0.6 661,046 - SMc02328 0.66 -0.9 661,046 - SMc02328 0.66 -1.0 661,076 - SMc02328 0.71 -1.4 661,076 - SMc02328 0.71 +1.4 661,104 + SMc02328 0.75 -2.1 661,257 + -2.2 661,258 - -0.2 661,258 - +0.8 661,396 + +0.9 661,396 + -0.1 661,396 + -1.0 661,409 + +0.6 661,409 + -2.2 661,475 + +0.7 661,476 - +0.3 661,476 - -1.0 661,476 - +0.6 661,476 - +0.6 661,489 - -0.4 661,489 - +0.3 661,489 - +0.3 661,495 + +0.2 661,495 + -0.0 661,501 + +0.5 661,501 + -0.6
Or see this region's nucleotide sequence