Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02109 and SMc02108 are separated by 72 nucleotides SMc02108 and SMc02107 are separated by 5 nucleotides SMc02107 and SMc02106 are separated by 253 nucleotides SMc02106 and SMc02105 are separated by 35 nucleotides
SMc02109: SMc02109 - ATP-dependent Clp protease ATP-binding subunit protein, at 1,599,831 to 1,602,347
SMc02109
SMc02108: SMc02108 - hypothetical protein, at 1,602,420 to 1,603,166
SMc02108
SMc02107: SMc02107 - hypothetical protein, at 1,603,172 to 1,603,507
SMc02107
SMc02106: SMc02106 - hypothetical protein, at 1,603,761 to 1,604,180
SMc02106
SMc02105: SMc02105 - hypothetical protein, at 1,604,216 to 1,605,403
SMc02105
Position (kb)
1603
1604 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1602.346 kb on - strand at 1602.384 kb on + strand at 1602.415 kb on - strand at 1602.490 kb on + strand at 1602.508 kb on + strand, within SMc02108 at 1602.508 kb on + strand, within SMc02108 at 1602.973 kb on - strand, within SMc02108 at 1603.017 kb on + strand, within SMc02108 at 1603.059 kb on + strand, within SMc02108 at 1603.190 kb on + strand at 1603.191 kb on - strand at 1603.343 kb on - strand, within SMc02107 at 1603.514 kb on - strand at 1603.525 kb on - strand at 1603.558 kb on + strand at 1603.634 kb on + strand at 1603.762 kb on + strand at 1603.801 kb on - strand at 1603.801 kb on - strand at 1603.801 kb on - strand at 1604.142 kb on + strand at 1604.143 kb on - strand at 1604.143 kb on - strand at 1604.157 kb on - strand at 1604.171 kb on - strand at 1604.308 kb on - strand at 1604.377 kb on - strand, within SMc02105 at 1604.445 kb on + strand, within SMc02105 at 1604.463 kb on + strand, within SMc02105 at 1604.464 kb on - strand, within SMc02105
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 1,602,346 - +0.5 1,602,384 + -2.0 1,602,415 - -3.7 1,602,490 + -0.9 1,602,508 + SMc02108 0.12 +0.2 1,602,508 + SMc02108 0.12 -1.3 1,602,973 - SMc02108 0.74 +1.5 1,603,017 + SMc02108 0.80 -0.1 1,603,059 + SMc02108 0.86 +0.9 1,603,190 + -0.5 1,603,191 - -0.3 1,603,343 - SMc02107 0.51 +1.2 1,603,514 - +0.6 1,603,525 - +1.3 1,603,558 + -0.3 1,603,634 + +0.6 1,603,762 + +0.6 1,603,801 - -1.5 1,603,801 - -0.4 1,603,801 - -1.9 1,604,142 + -0.2 1,604,143 - -0.6 1,604,143 - +1.6 1,604,157 - +0.6 1,604,171 - +0.2 1,604,308 - +0.4 1,604,377 - SMc02105 0.14 -1.2 1,604,445 + SMc02105 0.19 -1.7 1,604,463 + SMc02105 0.21 +0.8 1,604,464 - SMc02105 0.21 -0.8
Or see this region's nucleotide sequence