Strain Fitness in Sinorhizobium meliloti 1021 around SMc01663

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01662 and SMc01663 overlap by 4 nucleotidesSMc01663 and SMc01664 are separated by 122 nucleotides SMc01662: SMc01662 - oxidoreductase, at 2,461,617 to 2,464,064 SMc01662 SMc01663: SMc01663 - oxidoreductase, at 2,464,061 to 2,466,508 SMc01663 SMc01664: SMc01664 - transcriptional regulator, at 2,466,631 to 2,467,476 SMc01664 Position (kb) 2464 2465 2466 2467Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2463.061 kb on + strand, within SMc01662at 2463.061 kb on + strand, within SMc01662at 2463.289 kb on + strand, within SMc01662at 2463.289 kb on + strand, within SMc01662at 2463.289 kb on + strand, within SMc01662at 2463.289 kb on + strand, within SMc01662at 2463.289 kb on + strand, within SMc01662at 2463.290 kb on - strand, within SMc01662at 2463.292 kb on + strand, within SMc01662at 2463.292 kb on + strand, within SMc01662at 2463.292 kb on + strand, within SMc01662at 2463.293 kb on - strand, within SMc01662at 2463.361 kb on + strand, within SMc01662at 2463.361 kb on + strand, within SMc01662at 2463.362 kb on - strand, within SMc01662at 2463.362 kb on - strand, within SMc01662at 2463.362 kb on - strand, within SMc01662at 2463.362 kb on - strand, within SMc01662at 2463.362 kb on - strand, within SMc01662at 2463.705 kb on + strand, within SMc01662at 2463.705 kb on + strand, within SMc01662at 2463.745 kb on + strand, within SMc01662at 2463.857 kb on - strandat 2463.857 kb on - strandat 2463.991 kb on + strandat 2463.992 kb on - strandat 2464.118 kb on - strandat 2464.218 kb on + strandat 2464.218 kb on + strandat 2464.218 kb on + strandat 2464.281 kb on + strandat 2464.432 kb on - strand, within SMc01663at 2464.464 kb on + strand, within SMc01663at 2464.917 kb on + strand, within SMc01663at 2465.146 kb on - strand, within SMc01663at 2465.170 kb on + strand, within SMc01663at 2465.172 kb on + strand, within SMc01663at 2465.173 kb on - strand, within SMc01663at 2465.251 kb on - strand, within SMc01663at 2465.251 kb on - strand, within SMc01663at 2465.251 kb on - strand, within SMc01663at 2465.274 kb on + strand, within SMc01663at 2465.274 kb on + strand, within SMc01663at 2465.274 kb on + strand, within SMc01663at 2465.274 kb on + strand, within SMc01663at 2465.275 kb on - strand, within SMc01663at 2465.275 kb on - strand, within SMc01663at 2465.287 kb on - strand, within SMc01663at 2465.313 kb on + strand, within SMc01663at 2465.313 kb on + strand, within SMc01663at 2465.314 kb on - strand, within SMc01663at 2465.314 kb on - strand, within SMc01663at 2465.327 kb on - strand, within SMc01663at 2465.327 kb on - strand, within SMc01663at 2465.327 kb on - strand, within SMc01663at 2465.328 kb on + strand, within SMc01663at 2465.329 kb on - strand, within SMc01663at 2465.589 kb on + strand, within SMc01663at 2465.691 kb on + strand, within SMc01663at 2465.691 kb on + strand, within SMc01663at 2465.731 kb on - strand, within SMc01663at 2465.731 kb on - strand, within SMc01663at 2465.731 kb on - strand, within SMc01663at 2465.733 kb on + strand, within SMc01663at 2465.733 kb on + strand, within SMc01663at 2465.734 kb on - strand, within SMc01663at 2465.734 kb on - strand, within SMc01663at 2465.734 kb on - strand, within SMc01663at 2465.734 kb on - strand, within SMc01663at 2465.734 kb on - strand, within SMc01663at 2465.823 kb on + strand, within SMc01663at 2465.824 kb on - strand, within SMc01663at 2465.824 kb on - strand, within SMc01663at 2465.887 kb on - strand, within SMc01663at 2465.887 kb on - strand, within SMc01663at 2465.889 kb on + strand, within SMc01663at 2465.890 kb on - strand, within SMc01663at 2465.910 kb on + strand, within SMc01663at 2465.911 kb on - strand, within SMc01663at 2466.070 kb on - strand, within SMc01663at 2466.078 kb on + strand, within SMc01663at 2466.078 kb on + strand, within SMc01663at 2466.168 kb on + strand, within SMc01663at 2466.249 kb on + strand, within SMc01663at 2466.249 kb on + strand, within SMc01663at 2466.249 kb on + strand, within SMc01663at 2466.250 kb on - strand, within SMc01663at 2466.438 kb on + strandat 2466.438 kb on + strandat 2466.439 kb on - strandat 2466.439 kb on - strandat 2466.439 kb on - strandat 2466.994 kb on + strand, within SMc01664at 2466.994 kb on + strand, within SMc01664at 2466.994 kb on + strand, within SMc01664at 2466.994 kb on + strand, within SMc01664at 2466.995 kb on - strand, within SMc01664at 2466.995 kb on - strand, within SMc01664at 2466.995 kb on - strand, within SMc01664at 2466.995 kb on - strand, within SMc01664at 2466.997 kb on - strand, within SMc01664at 2467.066 kb on + strand, within SMc01664at 2467.066 kb on + strand, within SMc01664at 2467.067 kb on - strand, within SMc01664at 2467.096 kb on + strand, within SMc01664at 2467.097 kb on - strand, within SMc01664at 2467.174 kb on + strand, within SMc01664at 2467.175 kb on - strand, within SMc01664at 2467.177 kb on - strand, within SMc01664at 2467.309 kb on + strand, within SMc01664at 2467.310 kb on - strand, within SMc01664at 2467.310 kb on - strand, within SMc01664at 2467.460 kb on + strandat 2467.475 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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2,463,061 + SMc01662 0.59 -0.1
2,463,061 + SMc01662 0.59 -0.8
2,463,289 + SMc01662 0.68 -3.7
2,463,289 + SMc01662 0.68 +0.2
2,463,289 + SMc01662 0.68 -1.2
2,463,289 + SMc01662 0.68 +1.4
2,463,289 + SMc01662 0.68 -0.4
2,463,290 - SMc01662 0.68 +0.3
2,463,292 + SMc01662 0.68 -0.4
2,463,292 + SMc01662 0.68 -2.0
2,463,292 + SMc01662 0.68 -0.1
2,463,293 - SMc01662 0.68 -0.5
2,463,361 + SMc01662 0.71 +0.5
2,463,361 + SMc01662 0.71 +0.2
2,463,362 - SMc01662 0.71 +0.7
2,463,362 - SMc01662 0.71 +0.0
2,463,362 - SMc01662 0.71 +0.0
2,463,362 - SMc01662 0.71 +0.4
2,463,362 - SMc01662 0.71 +1.4
2,463,705 + SMc01662 0.85 -0.2
2,463,705 + SMc01662 0.85 -2.6
2,463,745 + SMc01662 0.87 -0.5
2,463,857 - +0.1
2,463,857 - -1.3
2,463,991 + -1.7
2,463,992 - +0.1
2,464,118 - +0.6
2,464,218 + -0.1
2,464,218 + -0.6
2,464,218 + -0.6
2,464,281 + -2.7
2,464,432 - SMc01663 0.15 -1.1
2,464,464 + SMc01663 0.16 +3.2
2,464,917 + SMc01663 0.35 -1.9
2,465,146 - SMc01663 0.44 -2.1
2,465,170 + SMc01663 0.45 +0.1
2,465,172 + SMc01663 0.45 +0.5
2,465,173 - SMc01663 0.45 -3.7
2,465,251 - SMc01663 0.49 +1.2
2,465,251 - SMc01663 0.49 -0.1
2,465,251 - SMc01663 0.49 -1.3
2,465,274 + SMc01663 0.50 +0.1
2,465,274 + SMc01663 0.50 -2.7
2,465,274 + SMc01663 0.50 -2.0
2,465,274 + SMc01663 0.50 +0.6
2,465,275 - SMc01663 0.50 +0.9
2,465,275 - SMc01663 0.50 -0.3
2,465,287 - SMc01663 0.50 +2.7
2,465,313 + SMc01663 0.51 -1.1
2,465,313 + SMc01663 0.51 +0.3
2,465,314 - SMc01663 0.51 -2.0
2,465,314 - SMc01663 0.51 -0.1
2,465,327 - SMc01663 0.52 -0.9
2,465,327 - SMc01663 0.52 +0.7
2,465,327 - SMc01663 0.52 +1.6
2,465,328 + SMc01663 0.52 +1.3
2,465,329 - SMc01663 0.52 -0.2
2,465,589 + SMc01663 0.62 -0.4
2,465,691 + SMc01663 0.67 -0.2
2,465,691 + SMc01663 0.67 +0.3
2,465,731 - SMc01663 0.68 +4.9
2,465,731 - SMc01663 0.68 +1.6
2,465,731 - SMc01663 0.68 -0.2
2,465,733 + SMc01663 0.68 -0.2
2,465,733 + SMc01663 0.68 +2.0
2,465,734 - SMc01663 0.68 -0.5
2,465,734 - SMc01663 0.68 -0.1
2,465,734 - SMc01663 0.68 +0.9
2,465,734 - SMc01663 0.68 -1.9
2,465,734 - SMc01663 0.68 +1.1
2,465,823 + SMc01663 0.72 +2.2
2,465,824 - SMc01663 0.72 +0.6
2,465,824 - SMc01663 0.72 -0.3
2,465,887 - SMc01663 0.75 +1.3
2,465,887 - SMc01663 0.75 +0.1
2,465,889 + SMc01663 0.75 -0.8
2,465,890 - SMc01663 0.75 +0.2
2,465,910 + SMc01663 0.76 +0.3
2,465,911 - SMc01663 0.76 -0.8
2,466,070 - SMc01663 0.82 -0.3
2,466,078 + SMc01663 0.82 -2.1
2,466,078 + SMc01663 0.82 -0.0
2,466,168 + SMc01663 0.86 +0.3
2,466,249 + SMc01663 0.89 +0.5
2,466,249 + SMc01663 0.89 +0.4
2,466,249 + SMc01663 0.89 +0.7
2,466,250 - SMc01663 0.89 +0.3
2,466,438 + -0.4
2,466,438 + +0.8
2,466,439 - +1.5
2,466,439 - +0.5
2,466,439 - -0.5
2,466,994 + SMc01664 0.43 +1.2
2,466,994 + SMc01664 0.43 +0.7
2,466,994 + SMc01664 0.43 +0.8
2,466,994 + SMc01664 0.43 +0.0
2,466,995 - SMc01664 0.43 -0.6
2,466,995 - SMc01664 0.43 +4.3
2,466,995 - SMc01664 0.43 -0.2
2,466,995 - SMc01664 0.43 +1.2
2,466,997 - SMc01664 0.43 +0.6
2,467,066 + SMc01664 0.51 -0.6
2,467,066 + SMc01664 0.51 -0.5
2,467,067 - SMc01664 0.52 -2.8
2,467,096 + SMc01664 0.55 -1.4
2,467,097 - SMc01664 0.55 -2.2
2,467,174 + SMc01664 0.64 -0.6
2,467,175 - SMc01664 0.64 +0.2
2,467,177 - SMc01664 0.65 +0.1
2,467,309 + SMc01664 0.80 -1.2
2,467,310 - SMc01664 0.80 -1.6
2,467,310 - SMc01664 0.80 +0.5
2,467,460 + -0.5
2,467,475 - +0.5

Or see this region's nucleotide sequence