Strain Fitness in Sinorhizobium meliloti 1021 around SMc01579

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01576 and SMc01579 are separated by 27 nucleotidesSMc01579 and SMc01582 are separated by 208 nucleotides SMc01576: SMc01576 - oxidoreductase, at 2,384,057 to 2,385,346 SMc01576 SMc01579: SMc01579 - hypothetical protein, at 2,385,374 to 2,386,090 SMc01579 SMc01582: SMc01582 - alcohol dehydrogenase, at 2,386,299 to 2,387,444 SMc01582 Position (kb) 2385 2386 2387Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2384.384 kb on + strand, within SMc01576at 2384.384 kb on + strand, within SMc01576at 2384.443 kb on + strand, within SMc01576at 2384.443 kb on + strand, within SMc01576at 2384.444 kb on - strand, within SMc01576at 2384.444 kb on - strand, within SMc01576at 2384.444 kb on - strand, within SMc01576at 2384.444 kb on - strand, within SMc01576at 2384.444 kb on - strand, within SMc01576at 2384.444 kb on - strand, within SMc01576at 2384.444 kb on - strand, within SMc01576at 2384.444 kb on - strand, within SMc01576at 2384.605 kb on - strand, within SMc01576at 2384.811 kb on - strand, within SMc01576at 2384.837 kb on + strand, within SMc01576at 2385.050 kb on + strand, within SMc01576at 2385.050 kb on + strand, within SMc01576at 2385.050 kb on + strand, within SMc01576at 2385.050 kb on + strand, within SMc01576at 2385.052 kb on + strand, within SMc01576at 2385.053 kb on - strand, within SMc01576at 2385.053 kb on - strand, within SMc01576at 2385.163 kb on + strand, within SMc01576at 2385.240 kb on + strandat 2385.555 kb on + strand, within SMc01579at 2386.154 kb on - strandat 2386.156 kb on + strandat 2386.401 kb on + strandat 2386.474 kb on + strand, within SMc01582at 2386.481 kb on - strand, within SMc01582at 2386.481 kb on - strand, within SMc01582at 2386.514 kb on - strand, within SMc01582at 2386.612 kb on + strand, within SMc01582at 2386.613 kb on - strand, within SMc01582at 2386.613 kb on - strand, within SMc01582at 2386.613 kb on - strand, within SMc01582at 2386.733 kb on + strand, within SMc01582at 2386.733 kb on + strand, within SMc01582at 2386.735 kb on + strand, within SMc01582at 2386.736 kb on - strand, within SMc01582at 2386.804 kb on + strand, within SMc01582at 2386.804 kb on + strand, within SMc01582at 2386.804 kb on + strand, within SMc01582at 2386.804 kb on + strand, within SMc01582at 2386.805 kb on - strand, within SMc01582at 2386.805 kb on - strand, within SMc01582at 2386.805 kb on - strand, within SMc01582at 2386.820 kb on - strand, within SMc01582

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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2,384,384 + SMc01576 0.25 +2.5
2,384,384 + SMc01576 0.25 -0.7
2,384,443 + SMc01576 0.30 -2.0
2,384,443 + SMc01576 0.30 +0.1
2,384,444 - SMc01576 0.30 +0.1
2,384,444 - SMc01576 0.30 -0.6
2,384,444 - SMc01576 0.30 -1.0
2,384,444 - SMc01576 0.30 +0.7
2,384,444 - SMc01576 0.30 +1.1
2,384,444 - SMc01576 0.30 +0.7
2,384,444 - SMc01576 0.30 +2.4
2,384,444 - SMc01576 0.30 +0.0
2,384,605 - SMc01576 0.42 +0.4
2,384,811 - SMc01576 0.58 +0.0
2,384,837 + SMc01576 0.60 +3.8
2,385,050 + SMc01576 0.77 -2.0
2,385,050 + SMc01576 0.77 +0.9
2,385,050 + SMc01576 0.77 +0.4
2,385,050 + SMc01576 0.77 +0.8
2,385,052 + SMc01576 0.77 +1.4
2,385,053 - SMc01576 0.77 +0.6
2,385,053 - SMc01576 0.77 +1.1
2,385,163 + SMc01576 0.86 -0.7
2,385,240 + +0.0
2,385,555 + SMc01579 0.25 -1.2
2,386,154 - -2.0
2,386,156 + +2.8
2,386,401 + +0.5
2,386,474 + SMc01582 0.15 +0.5
2,386,481 - SMc01582 0.16 -2.7
2,386,481 - SMc01582 0.16 +0.0
2,386,514 - SMc01582 0.19 +0.6
2,386,612 + SMc01582 0.27 -1.6
2,386,613 - SMc01582 0.27 +0.5
2,386,613 - SMc01582 0.27 +0.1
2,386,613 - SMc01582 0.27 +0.5
2,386,733 + SMc01582 0.38 -2.9
2,386,733 + SMc01582 0.38 +1.5
2,386,735 + SMc01582 0.38 -0.4
2,386,736 - SMc01582 0.38 -1.2
2,386,804 + SMc01582 0.44 -0.1
2,386,804 + SMc01582 0.44 +1.3
2,386,804 + SMc01582 0.44 -2.3
2,386,804 + SMc01582 0.44 -0.1
2,386,805 - SMc01582 0.44 +1.4
2,386,805 - SMc01582 0.44 +1.1
2,386,805 - SMc01582 0.44 +0.1
2,386,820 - SMc01582 0.45 +0.2

Or see this region's nucleotide sequence