Strain Fitness in Sinorhizobium meliloti 1021 around SMc01523

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01524 and SMc01523 are separated by 179 nucleotidesSMc01523 and SMc01522 are separated by 47 nucleotidesSMc01522 and SMc03949 are separated by 136 nucleotides SMc01524: SMc01524 - dipeptidase, at 2,609,119 to 2,610,174 SMc01524 SMc01523: SMc01523 - methyl viologen/ethidium resistance transmembrane protein, at 2,610,354 to 2,610,695 SMc01523 SMc01522: SMc01522 - hypothetical protein, at 2,610,743 to 2,611,303 SMc01522 SMc03949: SMc03949 - nitrogen regulatory protein, at 2,611,440 to 2,611,712 SMc03949 Position (kb) 2610 2611Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2609.406 kb on - strand, within SMc01524at 2609.406 kb on - strand, within SMc01524at 2609.687 kb on - strand, within SMc01524at 2609.705 kb on - strand, within SMc01524at 2609.787 kb on + strand, within SMc01524at 2609.788 kb on - strand, within SMc01524at 2609.788 kb on - strand, within SMc01524at 2609.830 kb on + strand, within SMc01524at 2609.830 kb on + strand, within SMc01524at 2609.831 kb on - strand, within SMc01524at 2609.831 kb on - strand, within SMc01524at 2610.193 kb on + strandat 2610.195 kb on + strandat 2610.195 kb on + strandat 2610.196 kb on - strandat 2610.257 kb on + strandat 2610.287 kb on - strandat 2610.387 kb on + strandat 2610.388 kb on - strandat 2610.508 kb on + strand, within SMc01523at 2610.508 kb on + strand, within SMc01523at 2610.530 kb on - strand, within SMc01523at 2610.541 kb on + strand, within SMc01523at 2610.541 kb on + strand, within SMc01523at 2610.541 kb on + strand, within SMc01523at 2610.542 kb on - strand, within SMc01523at 2610.542 kb on - strand, within SMc01523at 2610.676 kb on + strandat 2610.676 kb on + strandat 2610.676 kb on + strandat 2610.676 kb on + strandat 2610.716 kb on - strandat 2610.744 kb on + strandat 2610.744 kb on + strandat 2610.745 kb on - strandat 2610.745 kb on - strandat 2611.024 kb on - strand, within SMc01522at 2611.034 kb on - strand, within SMc01522at 2611.381 kb on + strandat 2611.381 kb on + strandat 2611.381 kb on + strandat 2611.382 kb on - strandat 2611.407 kb on + strandat 2611.422 kb on - strandat 2611.469 kb on + strand, within SMc03949at 2611.469 kb on + strand, within SMc03949at 2611.469 kb on + strand, within SMc03949at 2611.477 kb on + strand, within SMc03949at 2611.514 kb on + strand, within SMc03949at 2611.683 kb on - strand, within SMc03949at 2611.685 kb on - strandat 2611.685 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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2,609,406 - SMc01524 0.27 +0.2
2,609,406 - SMc01524 0.27 +0.7
2,609,687 - SMc01524 0.54 +0.4
2,609,705 - SMc01524 0.55 +0.3
2,609,787 + SMc01524 0.63 -1.4
2,609,788 - SMc01524 0.63 +0.3
2,609,788 - SMc01524 0.63 +0.1
2,609,830 + SMc01524 0.67 +0.3
2,609,830 + SMc01524 0.67 -0.1
2,609,831 - SMc01524 0.67 -0.3
2,609,831 - SMc01524 0.67 +0.2
2,610,193 + -2.1
2,610,195 + +0.4
2,610,195 + +3.4
2,610,196 - -0.2
2,610,257 + +0.3
2,610,287 - -0.2
2,610,387 + +2.1
2,610,388 - +1.4
2,610,508 + SMc01523 0.45 +0.9
2,610,508 + SMc01523 0.45 -0.4
2,610,530 - SMc01523 0.51 +1.0
2,610,541 + SMc01523 0.55 +2.8
2,610,541 + SMc01523 0.55 -1.8
2,610,541 + SMc01523 0.55 +0.3
2,610,542 - SMc01523 0.55 +0.1
2,610,542 - SMc01523 0.55 +0.1
2,610,676 + +0.4
2,610,676 + -0.2
2,610,676 + +0.2
2,610,676 + -0.0
2,610,716 - -0.5
2,610,744 + +0.4
2,610,744 + +0.8
2,610,745 - +0.8
2,610,745 - +0.9
2,611,024 - SMc01522 0.50 -0.8
2,611,034 - SMc01522 0.52 +2.1
2,611,381 + +0.6
2,611,381 + -0.2
2,611,381 + -2.3
2,611,382 - +0.6
2,611,407 + -0.7
2,611,422 - -0.6
2,611,469 + SMc03949 0.11 -3.0
2,611,469 + SMc03949 0.11 -0.1
2,611,469 + SMc03949 0.11 -1.0
2,611,477 + SMc03949 0.14 -0.8
2,611,514 + SMc03949 0.27 -1.2
2,611,683 - SMc03949 0.89 +0.6
2,611,685 - +0.1
2,611,685 - +0.4

Or see this region's nucleotide sequence