Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01524 and SMc01523 are separated by 179 nucleotides SMc01523 and SMc01522 are separated by 47 nucleotides SMc01522 and SMc03949 are separated by 136 nucleotides
SMc01524: SMc01524 - dipeptidase, at 2,609,119 to 2,610,174
SMc01524
SMc01523: SMc01523 - methyl viologen/ethidium resistance transmembrane protein, at 2,610,354 to 2,610,695
SMc01523
SMc01522: SMc01522 - hypothetical protein, at 2,610,743 to 2,611,303
SMc01522
SMc03949: SMc03949 - nitrogen regulatory protein, at 2,611,440 to 2,611,712
SMc03949
Position (kb)
2610
2611 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2609.406 kb on - strand, within SMc01524 at 2609.406 kb on - strand, within SMc01524 at 2609.687 kb on - strand, within SMc01524 at 2609.705 kb on - strand, within SMc01524 at 2609.787 kb on + strand, within SMc01524 at 2609.788 kb on - strand, within SMc01524 at 2609.788 kb on - strand, within SMc01524 at 2609.830 kb on + strand, within SMc01524 at 2609.830 kb on + strand, within SMc01524 at 2609.831 kb on - strand, within SMc01524 at 2609.831 kb on - strand, within SMc01524 at 2610.193 kb on + strand at 2610.195 kb on + strand at 2610.195 kb on + strand at 2610.196 kb on - strand at 2610.257 kb on + strand at 2610.287 kb on - strand at 2610.387 kb on + strand at 2610.388 kb on - strand at 2610.508 kb on + strand, within SMc01523 at 2610.508 kb on + strand, within SMc01523 at 2610.530 kb on - strand, within SMc01523 at 2610.541 kb on + strand, within SMc01523 at 2610.541 kb on + strand, within SMc01523 at 2610.541 kb on + strand, within SMc01523 at 2610.542 kb on - strand, within SMc01523 at 2610.542 kb on - strand, within SMc01523 at 2610.676 kb on + strand at 2610.676 kb on + strand at 2610.676 kb on + strand at 2610.676 kb on + strand at 2610.716 kb on - strand at 2610.744 kb on + strand at 2610.744 kb on + strand at 2610.745 kb on - strand at 2610.745 kb on - strand at 2611.024 kb on - strand, within SMc01522 at 2611.034 kb on - strand, within SMc01522 at 2611.381 kb on + strand at 2611.381 kb on + strand at 2611.381 kb on + strand at 2611.382 kb on - strand at 2611.407 kb on + strand at 2611.422 kb on - strand at 2611.469 kb on + strand, within SMc03949 at 2611.469 kb on + strand, within SMc03949 at 2611.469 kb on + strand, within SMc03949 at 2611.477 kb on + strand, within SMc03949 at 2611.514 kb on + strand, within SMc03949 at 2611.683 kb on - strand, within SMc03949 at 2611.685 kb on - strand at 2611.685 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 2,609,406 - SMc01524 0.27 +0.2 2,609,406 - SMc01524 0.27 +0.7 2,609,687 - SMc01524 0.54 +0.4 2,609,705 - SMc01524 0.55 +0.3 2,609,787 + SMc01524 0.63 -1.4 2,609,788 - SMc01524 0.63 +0.3 2,609,788 - SMc01524 0.63 +0.1 2,609,830 + SMc01524 0.67 +0.3 2,609,830 + SMc01524 0.67 -0.1 2,609,831 - SMc01524 0.67 -0.3 2,609,831 - SMc01524 0.67 +0.2 2,610,193 + -2.1 2,610,195 + +0.4 2,610,195 + +3.4 2,610,196 - -0.2 2,610,257 + +0.3 2,610,287 - -0.2 2,610,387 + +2.1 2,610,388 - +1.4 2,610,508 + SMc01523 0.45 +0.9 2,610,508 + SMc01523 0.45 -0.4 2,610,530 - SMc01523 0.51 +1.0 2,610,541 + SMc01523 0.55 +2.8 2,610,541 + SMc01523 0.55 -1.8 2,610,541 + SMc01523 0.55 +0.3 2,610,542 - SMc01523 0.55 +0.1 2,610,542 - SMc01523 0.55 +0.1 2,610,676 + +0.4 2,610,676 + -0.2 2,610,676 + +0.2 2,610,676 + -0.0 2,610,716 - -0.5 2,610,744 + +0.4 2,610,744 + +0.8 2,610,745 - +0.8 2,610,745 - +0.9 2,611,024 - SMc01522 0.50 -0.8 2,611,034 - SMc01522 0.52 +2.1 2,611,381 + +0.6 2,611,381 + -0.2 2,611,381 + -2.3 2,611,382 - +0.6 2,611,407 + -0.7 2,611,422 - -0.6 2,611,469 + SMc03949 0.11 -3.0 2,611,469 + SMc03949 0.11 -0.1 2,611,469 + SMc03949 0.11 -1.0 2,611,477 + SMc03949 0.14 -0.8 2,611,514 + SMc03949 0.27 -1.2 2,611,683 - SMc03949 0.89 +0.6 2,611,685 - +0.1 2,611,685 - +0.4
Or see this region's nucleotide sequence