Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01367 and SMc01366 overlap by 4 nucleotides SMc01366 and SMc01365 are separated by 36 nucleotides SMc01365 and SMc01364 are separated by 2 nucleotides
SMc01367: SMc01367 - hypothetical protein, at 1,413,420 to 1,414,136
SMc01367
SMc01366: SMc01366 - hypothetical protein, at 1,414,133 to 1,414,588
SMc01366
SMc01365: SMc01365 - exoribonuclease II protein, at 1,414,625 to 1,416,994
SMc01365
SMc01364: SMc01364 - DNA topoisomerase I, at 1,416,997 to 1,419,699
SMc01364
Position (kb)
1414
1415
1416
1417 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1413.698 kb on + strand, within SMc01367 at 1413.698 kb on + strand, within SMc01367 at 1413.713 kb on + strand, within SMc01367 at 1413.714 kb on - strand, within SMc01367 at 1413.716 kb on - strand, within SMc01367 at 1413.716 kb on - strand, within SMc01367 at 1413.786 kb on + strand, within SMc01367 at 1413.828 kb on + strand, within SMc01367 at 1413.961 kb on + strand, within SMc01367 at 1413.961 kb on + strand, within SMc01367 at 1413.961 kb on + strand, within SMc01367 at 1413.962 kb on - strand, within SMc01367 at 1414.310 kb on - strand, within SMc01366 at 1414.336 kb on + strand, within SMc01366 at 1414.336 kb on + strand, within SMc01366 at 1414.338 kb on + strand, within SMc01366 at 1414.338 kb on + strand, within SMc01366 at 1414.379 kb on - strand, within SMc01366 at 1414.379 kb on - strand, within SMc01366 at 1414.380 kb on + strand, within SMc01366 at 1414.781 kb on + strand at 1414.781 kb on + strand at 1414.782 kb on - strand at 1414.863 kb on + strand, within SMc01365 at 1414.864 kb on - strand, within SMc01365 at 1414.889 kb on - strand, within SMc01365 at 1414.889 kb on - strand, within SMc01365 at 1414.892 kb on + strand, within SMc01365 at 1414.893 kb on - strand, within SMc01365 at 1414.893 kb on - strand, within SMc01365 at 1414.893 kb on - strand, within SMc01365 at 1414.895 kb on - strand, within SMc01365 at 1414.895 kb on - strand, within SMc01365 at 1415.026 kb on + strand, within SMc01365 at 1415.081 kb on - strand, within SMc01365 at 1415.112 kb on - strand, within SMc01365 at 1415.112 kb on - strand, within SMc01365 at 1415.202 kb on + strand, within SMc01365 at 1415.203 kb on - strand, within SMc01365 at 1415.233 kb on + strand, within SMc01365 at 1415.247 kb on + strand, within SMc01365 at 1415.298 kb on + strand, within SMc01365 at 1415.299 kb on - strand, within SMc01365 at 1415.442 kb on + strand, within SMc01365 at 1415.442 kb on + strand, within SMc01365 at 1415.443 kb on - strand, within SMc01365 at 1415.443 kb on - strand, within SMc01365 at 1415.644 kb on + strand, within SMc01365 at 1415.649 kb on + strand, within SMc01365 at 1415.649 kb on + strand, within SMc01365 at 1415.678 kb on - strand, within SMc01365 at 1415.685 kb on - strand, within SMc01365 at 1415.739 kb on + strand, within SMc01365 at 1415.739 kb on + strand, within SMc01365 at 1415.739 kb on + strand, within SMc01365 at 1415.783 kb on - strand, within SMc01365 at 1415.783 kb on - strand, within SMc01365 at 1415.876 kb on + strand, within SMc01365 at 1416.086 kb on + strand, within SMc01365 at 1416.086 kb on + strand, within SMc01365 at 1416.190 kb on + strand, within SMc01365 at 1416.191 kb on - strand, within SMc01365 at 1416.474 kb on + strand, within SMc01365 at 1416.475 kb on - strand, within SMc01365 at 1416.664 kb on + strand, within SMc01365 at 1416.664 kb on + strand, within SMc01365 at 1416.774 kb on - strand at 1417.265 kb on + strand at 1417.266 kb on - strand at 1417.266 kb on - strand at 1417.294 kb on - strand, within SMc01364 at 1417.294 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 1,413,698 + SMc01367 0.39 -2.6 1,413,698 + SMc01367 0.39 -0.5 1,413,713 + SMc01367 0.41 -3.7 1,413,714 - SMc01367 0.41 +0.6 1,413,716 - SMc01367 0.41 +0.3 1,413,716 - SMc01367 0.41 -0.1 1,413,786 + SMc01367 0.51 -1.0 1,413,828 + SMc01367 0.57 -0.4 1,413,961 + SMc01367 0.75 -1.7 1,413,961 + SMc01367 0.75 +0.8 1,413,961 + SMc01367 0.75 +0.8 1,413,962 - SMc01367 0.76 -2.0 1,414,310 - SMc01366 0.39 -0.3 1,414,336 + SMc01366 0.45 -0.8 1,414,336 + SMc01366 0.45 -0.2 1,414,338 + SMc01366 0.45 +0.8 1,414,338 + SMc01366 0.45 -1.5 1,414,379 - SMc01366 0.54 +0.2 1,414,379 - SMc01366 0.54 -1.8 1,414,380 + SMc01366 0.54 -4.4 1,414,781 + -0.9 1,414,781 + -1.5 1,414,782 - -0.2 1,414,863 + SMc01365 0.10 -0.7 1,414,864 - SMc01365 0.10 -1.2 1,414,889 - SMc01365 0.11 -2.5 1,414,889 - SMc01365 0.11 +0.1 1,414,892 + SMc01365 0.11 -0.5 1,414,893 - SMc01365 0.11 -1.6 1,414,893 - SMc01365 0.11 +0.6 1,414,893 - SMc01365 0.11 -2.9 1,414,895 - SMc01365 0.11 -0.7 1,414,895 - SMc01365 0.11 +1.0 1,415,026 + SMc01365 0.17 -3.6 1,415,081 - SMc01365 0.19 +1.2 1,415,112 - SMc01365 0.21 -0.7 1,415,112 - SMc01365 0.21 -0.7 1,415,202 + SMc01365 0.24 -2.3 1,415,203 - SMc01365 0.24 -0.0 1,415,233 + SMc01365 0.26 -2.9 1,415,247 + SMc01365 0.26 -1.8 1,415,298 + SMc01365 0.28 +1.2 1,415,299 - SMc01365 0.28 +1.1 1,415,442 + SMc01365 0.34 -0.2 1,415,442 + SMc01365 0.34 +0.3 1,415,443 - SMc01365 0.35 -2.0 1,415,443 - SMc01365 0.35 -1.9 1,415,644 + SMc01365 0.43 +0.6 1,415,649 + SMc01365 0.43 -0.2 1,415,649 + SMc01365 0.43 +0.3 1,415,678 - SMc01365 0.44 -2.8 1,415,685 - SMc01365 0.45 -1.9 1,415,739 + SMc01365 0.47 -0.8 1,415,739 + SMc01365 0.47 -0.5 1,415,739 + SMc01365 0.47 -2.8 1,415,783 - SMc01365 0.49 +0.4 1,415,783 - SMc01365 0.49 +0.4 1,415,876 + SMc01365 0.53 -0.6 1,416,086 + SMc01365 0.62 +0.4 1,416,086 + SMc01365 0.62 -0.5 1,416,190 + SMc01365 0.66 -1.2 1,416,191 - SMc01365 0.66 -1.1 1,416,474 + SMc01365 0.78 -1.1 1,416,475 - SMc01365 0.78 -0.4 1,416,664 + SMc01365 0.86 -0.4 1,416,664 + SMc01365 0.86 +2.4 1,416,774 - -0.4 1,417,265 + -5.2 1,417,266 - +0.3 1,417,266 - -0.5 1,417,294 - SMc01364 0.11 -0.4 1,417,294 - +1.4
Or see this region's nucleotide sequence