Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01219 and SMc01218 are separated by 83 nucleotides SMc01218 and SMc01217 are separated by 292 nucleotides
SMc01219: SMc01219 - lipopolysaccharide core biosynthesis mannosyltransferase, at 1,705,047 to 1,706,102
SMc01219
SMc01218: SMc01218 - transcription elongation factor GreA, at 1,706,186 to 1,706,662
SMc01218
SMc01217: SMc01217 - transport transmembrane protein, at 1,706,955 to 1,708,424
SMc01217
Position (kb)
1706
1707 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1706.775 kb on - strand at 1706.775 kb on - strand at 1706.775 kb on - strand at 1706.882 kb on - strand at 1706.882 kb on - strand at 1706.882 kb on - strand at 1706.892 kb on + strand at 1706.915 kb on + strand at 1706.915 kb on + strand at 1706.916 kb on - strand at 1706.933 kb on - strand at 1706.939 kb on + strand at 1706.940 kb on - strand at 1706.940 kb on - strand at 1706.962 kb on + strand at 1707.189 kb on + strand, within SMc01217 at 1707.368 kb on + strand, within SMc01217 at 1707.369 kb on - strand, within SMc01217 at 1707.369 kb on - strand, within SMc01217 at 1707.387 kb on + strand, within SMc01217 at 1707.387 kb on + strand, within SMc01217 at 1707.388 kb on - strand, within SMc01217 at 1707.454 kb on + strand, within SMc01217 at 1707.507 kb on + strand, within SMc01217 at 1707.507 kb on + strand, within SMc01217 at 1707.507 kb on + strand, within SMc01217 at 1707.508 kb on - strand, within SMc01217 at 1707.542 kb on - strand, within SMc01217 at 1707.658 kb on + strand, within SMc01217 at 1707.658 kb on + strand, within SMc01217 at 1707.659 kb on - strand, within SMc01217 at 1707.659 kb on - strand, within SMc01217
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 1,706,775 - +0.9 1,706,775 - -0.7 1,706,775 - +0.9 1,706,882 - -0.1 1,706,882 - -0.5 1,706,882 - -0.9 1,706,892 + +2.5 1,706,915 + -0.9 1,706,915 + +0.6 1,706,916 - +0.0 1,706,933 - -0.5 1,706,939 + -1.6 1,706,940 - -0.2 1,706,940 - -0.4 1,706,962 + +2.3 1,707,189 + SMc01217 0.16 -3.9 1,707,368 + SMc01217 0.28 +1.1 1,707,369 - SMc01217 0.28 -0.9 1,707,369 - SMc01217 0.28 -0.6 1,707,387 + SMc01217 0.29 +0.3 1,707,387 + SMc01217 0.29 -1.7 1,707,388 - SMc01217 0.29 +0.4 1,707,454 + SMc01217 0.34 +1.2 1,707,507 + SMc01217 0.38 +0.3 1,707,507 + SMc01217 0.38 +0.2 1,707,507 + SMc01217 0.38 +0.9 1,707,508 - SMc01217 0.38 +2.0 1,707,542 - SMc01217 0.40 +0.4 1,707,658 + SMc01217 0.48 +0.1 1,707,658 + SMc01217 0.48 -0.4 1,707,659 - SMc01217 0.48 +0.6 1,707,659 - SMc01217 0.48 -0.1
Or see this region's nucleotide sequence