Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01192 and SMc01191 are separated by 229 nucleotides SMc01191 and SMc01190 are separated by 90 nucleotides SMc01190 and SMc01189 overlap by 4 nucleotides SMc01189 and SMc01188 are separated by 57 nucleotides
SMc01192: SMc01192 - methionyl-tRNA synthetase, at 1,737,572 to 1,739,122
SMc01192
SMc01191: SMc01191 - hypothetical protein, at 1,739,352 to 1,739,663
SMc01191
SMc01190: SMc01190 - DNA polymerase III subunit delta', at 1,739,754 to 1,740,785
SMc01190
SMc01189: SMc01189 - thymidylate kinase, at 1,740,782 to 1,741,486
SMc01189
SMc01188: SMc01188 - penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein, at 1,741,544 to 1,742,698
SMc01188
Position (kb)
1739
1740
1741 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1739.154 kb on - strand at 1739.154 kb on - strand at 1739.154 kb on - strand at 1739.154 kb on - strand at 1739.163 kb on - strand at 1739.184 kb on - strand at 1739.299 kb on + strand at 1739.300 kb on - strand at 1739.300 kb on - strand at 1739.437 kb on - strand, within SMc01191 at 1739.437 kb on - strand, within SMc01191 at 1739.438 kb on + strand, within SMc01191 at 1739.438 kb on - strand, within SMc01191 at 1739.439 kb on - strand, within SMc01191 at 1739.564 kb on + strand, within SMc01191 at 1739.564 kb on + strand, within SMc01191 at 1739.565 kb on - strand, within SMc01191 at 1739.623 kb on + strand, within SMc01191 at 1739.662 kb on - strand at 1739.678 kb on - strand at 1739.703 kb on + strand at 1739.703 kb on + strand at 1739.756 kb on - strand at 1739.758 kb on - strand at 1740.728 kb on - strand at 1740.834 kb on - strand at 1741.488 kb on - strand at 1741.488 kb on - strand at 1741.488 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 1,739,154 - -1.5 1,739,154 - -0.1 1,739,154 - +0.7 1,739,154 - -1.3 1,739,163 - +0.1 1,739,184 - -0.8 1,739,299 + -0.0 1,739,300 - +0.3 1,739,300 - +0.5 1,739,437 - SMc01191 0.27 -3.6 1,739,437 - SMc01191 0.27 +0.5 1,739,438 + SMc01191 0.28 -0.2 1,739,438 - SMc01191 0.28 +2.9 1,739,439 - SMc01191 0.28 +0.0 1,739,564 + SMc01191 0.68 +0.7 1,739,564 + SMc01191 0.68 +0.8 1,739,565 - SMc01191 0.68 -0.3 1,739,623 + SMc01191 0.87 -0.4 1,739,662 - -0.6 1,739,678 - +0.3 1,739,703 + +0.6 1,739,703 + +1.5 1,739,756 - +2.1 1,739,758 - -1.4 1,740,728 - -0.6 1,740,834 - -0.1 1,741,488 - +1.8 1,741,488 - -0.3 1,741,488 - -0.1
Or see this region's nucleotide sequence