Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00963 and SMc00962 overlap by 7 nucleotides SMc00962 and SMc00961 are separated by 133 nucleotides SMc00961 and SMc00960 are separated by 103 nucleotides
SMc00963: SMc00963 - hypothetical protein, at 977,015 to 977,620
SMc00963
SMc00962: SMc00962 - ABC transporter ATP-binding protein, at 977,614 to 978,294
SMc00962
SMc00961: SMc00961 - hypothetical protein, at 978,428 to 979,627
SMc00961
SMc00960: SMc00960 - hypothetical protein, at 979,731 to 981,146
SMc00960
Position (kb) 978
979
980 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 977.466 kb on + strand, within SMc00963 at 977.604 kb on + strand at 977.605 kb on - strand at 977.605 kb on - strand at 977.605 kb on - strand at 978.330 kb on + strand at 978.331 kb on - strand at 978.333 kb on - strand at 978.333 kb on - strand at 978.348 kb on + strand at 978.349 kb on - strand at 978.360 kb on + strand at 978.361 kb on - strand at 978.372 kb on + strand at 978.372 kb on + strand at 978.372 kb on + strand at 978.373 kb on - strand at 978.373 kb on - strand at 978.373 kb on - strand at 978.373 kb on - strand at 978.373 kb on - strand at 978.378 kb on + strand at 978.378 kb on + strand at 978.378 kb on + strand at 978.378 kb on + strand at 978.378 kb on + strand at 978.378 kb on + strand at 978.378 kb on + strand at 978.379 kb on - strand at 978.379 kb on - strand at 978.379 kb on - strand at 978.570 kb on + strand, within SMc00961 at 978.570 kb on + strand, within SMc00961 at 978.570 kb on + strand, within SMc00961 at 978.571 kb on - strand, within SMc00961 at 978.623 kb on + strand, within SMc00961 at 978.623 kb on + strand, within SMc00961 at 978.623 kb on + strand, within SMc00961 at 978.819 kb on - strand, within SMc00961 at 979.395 kb on - strand, within SMc00961 at 979.395 kb on - strand, within SMc00961 at 979.400 kb on + strand, within SMc00961 at 979.400 kb on + strand, within SMc00961 at 979.400 kb on + strand, within SMc00961 at 979.400 kb on + strand, within SMc00961 at 979.400 kb on + strand, within SMc00961 at 979.400 kb on + strand, within SMc00961 at 979.401 kb on - strand, within SMc00961 at 979.401 kb on - strand, within SMc00961 at 979.403 kb on + strand, within SMc00961 at 979.403 kb on + strand, within SMc00961 at 979.403 kb on + strand, within SMc00961 at 979.403 kb on + strand, within SMc00961 at 979.403 kb on + strand, within SMc00961 at 979.404 kb on - strand, within SMc00961 at 979.404 kb on - strand, within SMc00961 at 979.404 kb on - strand, within SMc00961 at 979.677 kb on + strand at 979.944 kb on + strand, within SMc00960 at 979.944 kb on + strand, within SMc00960 at 979.944 kb on + strand, within SMc00960 at 980.267 kb on + strand, within SMc00960 at 980.268 kb on - strand, within SMc00960 at 980.350 kb on + strand, within SMc00960
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 977,466 + SMc00963 0.74 -5.5 977,604 + -3.0 977,605 - -0.0 977,605 - -0.2 977,605 - +0.1 978,330 + -0.7 978,331 - +0.9 978,333 - -0.1 978,333 - -1.6 978,348 + -2.6 978,349 - +0.5 978,360 + -3.4 978,361 - -0.1 978,372 + -2.5 978,372 + -2.6 978,372 + -2.6 978,373 - +0.6 978,373 - -0.6 978,373 - -0.1 978,373 - -0.3 978,373 - -2.2 978,378 + +0.9 978,378 + -2.6 978,378 + -0.7 978,378 + +0.0 978,378 + +0.5 978,378 + +1.0 978,378 + -0.4 978,379 - +0.1 978,379 - -2.8 978,379 - -0.1 978,570 + SMc00961 0.12 -0.0 978,570 + SMc00961 0.12 -1.1 978,570 + SMc00961 0.12 +0.1 978,571 - SMc00961 0.12 +0.0 978,623 + SMc00961 0.16 -2.3 978,623 + SMc00961 0.16 -0.7 978,623 + SMc00961 0.16 -0.6 978,819 - SMc00961 0.33 +0.6 979,395 - SMc00961 0.81 +0.6 979,395 - SMc00961 0.81 +0.3 979,400 + SMc00961 0.81 +0.3 979,400 + SMc00961 0.81 -0.7 979,400 + SMc00961 0.81 -1.6 979,400 + SMc00961 0.81 +1.3 979,400 + SMc00961 0.81 +1.1 979,400 + SMc00961 0.81 +0.0 979,401 - SMc00961 0.81 -0.1 979,401 - SMc00961 0.81 -0.6 979,403 + SMc00961 0.81 +0.7 979,403 + SMc00961 0.81 +1.0 979,403 + SMc00961 0.81 +0.5 979,403 + SMc00961 0.81 +0.0 979,403 + SMc00961 0.81 -1.4 979,404 - SMc00961 0.81 +0.1 979,404 - SMc00961 0.81 +0.8 979,404 - SMc00961 0.81 +0.6 979,677 + -0.0 979,944 + SMc00960 0.15 +0.6 979,944 + SMc00960 0.15 -0.2 979,944 + SMc00960 0.15 -0.7 980,267 + SMc00960 0.38 -2.4 980,268 - SMc00960 0.38 -0.3 980,350 + SMc00960 0.44 -1.3
Or see this region's nucleotide sequence