Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00650 and SMc00649 are separated by 230 nucleotides SMc00649 and SMc00648 are separated by 4 nucleotides SMc00648 and SMc00647 are separated by 29 nucleotides
SMc00650: SMc00650 - hypothetical protein, at 2,925,548 to 2,926,630
SMc00650
SMc00649: SMc00649 - tRNA/rRNA methyltransferase, at 2,926,861 to 2,927,688
SMc00649
SMc00648: SMc00648 - hypothetical protein, at 2,927,693 to 2,928,076
SMc00648
SMc00647: SMc00647 - ribosomal large subunit pseudouridine synthase, at 2,928,106 to 2,929,137
SMc00647
Position (kb)
2926
2927
2928 Strain fitness (log2 ratio)
-1
0
1 at 2926.047 kb on + strand, within SMc00650 at 2926.047 kb on + strand, within SMc00650 at 2926.901 kb on - strand at 2927.192 kb on + strand, within SMc00649 at 2927.192 kb on + strand, within SMc00649 at 2927.192 kb on + strand, within SMc00649 at 2927.271 kb on + strand, within SMc00649 at 2927.271 kb on + strand, within SMc00649 at 2927.287 kb on + strand, within SMc00649 at 2927.323 kb on + strand, within SMc00649 at 2927.324 kb on - strand, within SMc00649 at 2927.438 kb on + strand, within SMc00649 at 2927.439 kb on - strand, within SMc00649 at 2927.439 kb on - strand, within SMc00649 at 2927.858 kb on + strand, within SMc00648 at 2927.859 kb on - strand, within SMc00648 at 2927.931 kb on + strand, within SMc00648 at 2927.956 kb on + strand, within SMc00648 at 2927.956 kb on + strand, within SMc00648 at 2928.120 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 2,926,047 + SMc00650 0.46 +0.5 2,926,047 + SMc00650 0.46 +0.9 2,926,901 - +0.1 2,927,192 + SMc00649 0.40 +0.5 2,927,192 + SMc00649 0.40 +0.5 2,927,192 + SMc00649 0.40 +0.3 2,927,271 + SMc00649 0.50 +1.0 2,927,271 + SMc00649 0.50 +0.1 2,927,287 + SMc00649 0.51 -1.0 2,927,323 + SMc00649 0.56 -1.7 2,927,324 - SMc00649 0.56 -1.6 2,927,438 + SMc00649 0.70 -1.2 2,927,439 - SMc00649 0.70 -1.0 2,927,439 - SMc00649 0.70 -0.5 2,927,858 + SMc00648 0.43 +0.8 2,927,859 - SMc00648 0.43 +1.0 2,927,931 + SMc00648 0.62 +0.2 2,927,956 + SMc00648 0.68 -0.5 2,927,956 + SMc00648 0.68 +1.0 2,928,120 + +0.6
Or see this region's nucleotide sequence