Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1010 and SMa1011 are separated by 42 nucleotides SMa1011 and SMa1013 are separated by 252 nucleotides SMa1013 and SMa1014 are separated by 85 nucleotides SMa1014 and SMa1016 are separated by 4 nucleotides
SMa1010: SMa1010 - hypothetical protein, at 559,459 to 559,965
SMa1010
SMa1011: SMa1011 - hypothetical protein, at 560,008 to 560,433
SMa1011
SMa1013: SMa1013 - ATPase P, at 560,686 to 563,166
SMa1013
SMa1014: SMa1014 - HmrR, at 563,252 to 563,668
SMa1014
SMa1016: SMa1016 - acyltransferase, at 563,673 to 564,947
SMa1016
Position (kb) 560
561
562
563
564 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 560.027 kb on + strand at 560.028 kb on - strand at 560.028 kb on - strand at 560.031 kb on + strand at 560.032 kb on - strand at 560.204 kb on + strand, within SMa1011 at 560.205 kb on - strand, within SMa1011 at 560.205 kb on - strand, within SMa1011 at 560.205 kb on - strand, within SMa1011 at 560.260 kb on + strand, within SMa1011 at 560.260 kb on + strand, within SMa1011 at 560.331 kb on - strand, within SMa1011 at 560.331 kb on - strand, within SMa1011 at 560.331 kb on - strand, within SMa1011 at 560.375 kb on + strand, within SMa1011 at 560.375 kb on + strand, within SMa1011 at 560.375 kb on + strand, within SMa1011 at 560.414 kb on + strand at 560.432 kb on - strand at 560.539 kb on - strand at 560.567 kb on - strand at 560.588 kb on + strand at 560.651 kb on + strand at 560.733 kb on + strand at 561.102 kb on - strand, within SMa1013 at 561.222 kb on + strand, within SMa1013 at 561.223 kb on - strand, within SMa1013 at 561.272 kb on + strand, within SMa1013 at 561.272 kb on + strand, within SMa1013 at 561.294 kb on + strand at 561.309 kb on + strand, within SMa1013 at 561.316 kb on + strand, within SMa1013 at 561.316 kb on + strand, within SMa1013 at 561.316 kb on + strand, within SMa1013 at 561.316 kb on + strand, within SMa1013 at 561.316 kb on + strand, within SMa1013 at 561.316 kb on + strand, within SMa1013 at 561.317 kb on - strand, within SMa1013 at 561.317 kb on - strand, within SMa1013 at 561.317 kb on - strand, within SMa1013 at 561.318 kb on + strand, within SMa1013 at 561.511 kb on + strand, within SMa1013 at 561.514 kb on + strand, within SMa1013 at 561.757 kb on + strand, within SMa1013 at 561.757 kb on + strand, within SMa1013 at 561.758 kb on - strand, within SMa1013 at 561.761 kb on + strand, within SMa1013 at 561.761 kb on + strand, within SMa1013 at 561.762 kb on - strand, within SMa1013 at 562.024 kb on + strand, within SMa1013 at 562.025 kb on - strand, within SMa1013 at 562.088 kb on + strand, within SMa1013 at 562.088 kb on + strand, within SMa1013 at 562.088 kb on + strand, within SMa1013 at 562.089 kb on - strand, within SMa1013 at 562.325 kb on + strand, within SMa1013 at 562.542 kb on + strand, within SMa1013 at 562.543 kb on - strand, within SMa1013 at 562.543 kb on - strand, within SMa1013 at 562.565 kb on - strand, within SMa1013 at 563.015 kb on - strand at 563.053 kb on + strand at 563.131 kb on - strand at 563.227 kb on + strand at 563.227 kb on + strand at 563.227 kb on + strand at 563.228 kb on - strand at 563.233 kb on + strand at 563.234 kb on - strand at 563.235 kb on + strand at 563.285 kb on + strand at 563.521 kb on - strand, within SMa1014 at 563.732 kb on + strand at 563.733 kb on - strand at 563.733 kb on - strand at 563.733 kb on - strand at 563.736 kb on + strand at 563.754 kb on + strand at 563.800 kb on + strand at 563.884 kb on + strand, within SMa1016 at 563.884 kb on + strand, within SMa1016 at 563.884 kb on + strand, within SMa1016 at 563.892 kb on - strand, within SMa1016 at 563.893 kb on + strand, within SMa1016 at 563.894 kb on - strand, within SMa1016 at 563.945 kb on + strand, within SMa1016 at 563.945 kb on + strand, within SMa1016 at 563.945 kb on + strand, within SMa1016 at 563.945 kb on + strand, within SMa1016 at 563.945 kb on + strand, within SMa1016 at 563.946 kb on - strand, within SMa1016 at 563.963 kb on + strand, within SMa1016
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 560,027 + -2.0 560,028 - -0.1 560,028 - -2.4 560,031 + -0.1 560,032 - -2.0 560,204 + SMa1011 0.46 -0.6 560,205 - SMa1011 0.46 -3.4 560,205 - SMa1011 0.46 -0.2 560,205 - SMa1011 0.46 -1.8 560,260 + SMa1011 0.59 -0.8 560,260 + SMa1011 0.59 -3.2 560,331 - SMa1011 0.76 -0.2 560,331 - SMa1011 0.76 -2.2 560,331 - SMa1011 0.76 +0.5 560,375 + SMa1011 0.86 -0.7 560,375 + SMa1011 0.86 +0.7 560,375 + SMa1011 0.86 -0.4 560,414 + -0.8 560,432 - +0.7 560,539 - -0.0 560,567 - -1.5 560,588 + +2.8 560,651 + +2.0 560,733 + +0.3 561,102 - SMa1013 0.17 -2.5 561,222 + SMa1013 0.22 -2.2 561,223 - SMa1013 0.22 -3.5 561,272 + SMa1013 0.24 +0.3 561,272 + SMa1013 0.24 -0.1 561,294 + +0.0 561,309 + SMa1013 0.25 +1.5 561,316 + SMa1013 0.25 -0.5 561,316 + SMa1013 0.25 +0.9 561,316 + SMa1013 0.25 -0.6 561,316 + SMa1013 0.25 -1.1 561,316 + SMa1013 0.25 -0.1 561,316 + SMa1013 0.25 +0.0 561,317 - SMa1013 0.25 -1.8 561,317 - SMa1013 0.25 -0.6 561,317 - SMa1013 0.25 -1.1 561,318 + SMa1013 0.25 -0.1 561,511 + SMa1013 0.33 -0.8 561,514 + SMa1013 0.33 -1.9 561,757 + SMa1013 0.43 +1.0 561,757 + SMa1013 0.43 -0.3 561,758 - SMa1013 0.43 -0.6 561,761 + SMa1013 0.43 -1.4 561,761 + SMa1013 0.43 +0.5 561,762 - SMa1013 0.43 -3.0 562,024 + SMa1013 0.54 -0.4 562,025 - SMa1013 0.54 -1.1 562,088 + SMa1013 0.57 -0.4 562,088 + SMa1013 0.57 -0.4 562,088 + SMa1013 0.57 +0.0 562,089 - SMa1013 0.57 -1.7 562,325 + SMa1013 0.66 -0.3 562,542 + SMa1013 0.75 -0.5 562,543 - SMa1013 0.75 -1.7 562,543 - SMa1013 0.75 +0.7 562,565 - SMa1013 0.76 +1.3 563,015 - +0.6 563,053 + -1.1 563,131 - -0.8 563,227 + +0.1 563,227 + -0.6 563,227 + -0.0 563,228 - -1.0 563,233 + +0.3 563,234 - -1.4 563,235 + -1.8 563,285 + +0.3 563,521 - SMa1014 0.65 +1.4 563,732 + -0.3 563,733 - -1.8 563,733 - -0.0 563,733 - -0.6 563,736 + +2.2 563,754 + +0.2 563,800 + -2.1 563,884 + SMa1016 0.17 -0.0 563,884 + SMa1016 0.17 +1.6 563,884 + SMa1016 0.17 -0.4 563,892 - SMa1016 0.17 -3.4 563,893 + SMa1016 0.17 +0.5 563,894 - SMa1016 0.17 -0.7 563,945 + SMa1016 0.21 +0.8 563,945 + SMa1016 0.21 +0.3 563,945 + SMa1016 0.21 -0.5 563,945 + SMa1016 0.21 -0.0 563,945 + SMa1016 0.21 +0.6 563,946 - SMa1016 0.21 -0.3 563,963 + SMa1016 0.23 +0.6
Or see this region's nucleotide sequence