Strain Fitness in Sinorhizobium meliloti 1021 around SMa0853

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0851 and SMa0852 are separated by 688 nucleotidesSMa0852 and SMa0853 are separated by 0 nucleotidesSMa0853 and SMa0854 are separated by 493 nucleotides SMa0851: SMa0851 - NodH sulfotransferase, at 468,199 to 468,942 SMa0851 SMa0852: SMa0852 - acyl carrier protein, at 469,631 to 469,912 SMa0852 SMa0853: SMa0853 - 3-ketoacyl-ACP synthase, at 469,913 to 471,121 SMa0853 SMa0854: SMa0854 - 3-ketoacyl-ACP reductase, at 471,615 to 472,352 SMa0854 Position (kb) 469 470 471 472Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 468.960 kb on + strandat 468.990 kb on - strandat 469.012 kb on - strandat 469.012 kb on - strandat 469.034 kb on + strandat 469.049 kb on + strandat 469.049 kb on + strandat 469.050 kb on - strandat 469.055 kb on + strandat 469.055 kb on + strandat 469.056 kb on - strandat 469.168 kb on - strandat 469.198 kb on - strandat 469.237 kb on + strandat 469.275 kb on + strandat 469.290 kb on + strandat 469.435 kb on + strandat 469.435 kb on + strandat 469.436 kb on - strandat 469.439 kb on + strandat 469.440 kb on - strandat 469.440 kb on - strandat 469.440 kb on - strandat 469.532 kb on + strandat 469.635 kb on + strandat 469.635 kb on + strandat 469.713 kb on + strand, within SMa0852at 469.716 kb on + strand, within SMa0852at 469.717 kb on - strand, within SMa0852at 469.808 kb on + strand, within SMa0852at 469.808 kb on + strand, within SMa0852at 469.809 kb on - strand, within SMa0852at 469.809 kb on - strand, within SMa0852at 469.872 kb on + strand, within SMa0852at 469.901 kb on - strandat 469.950 kb on + strandat 470.055 kb on + strand, within SMa0853at 470.262 kb on - strand, within SMa0853at 470.262 kb on - strand, within SMa0853at 470.313 kb on + strand, within SMa0853at 470.313 kb on + strand, within SMa0853at 470.580 kb on + strand, within SMa0853at 470.580 kb on + strand, within SMa0853at 470.581 kb on - strand, within SMa0853at 470.581 kb on - strand, within SMa0853at 470.619 kb on - strand, within SMa0853at 470.780 kb on + strand, within SMa0853at 470.830 kb on + strand, within SMa0853at 470.830 kb on + strand, within SMa0853at 470.865 kb on - strand, within SMa0853at 470.987 kb on + strand, within SMa0853at 471.341 kb on - strandat 471.447 kb on + strandat 471.481 kb on + strandat 471.567 kb on + strandat 471.589 kb on - strandat 471.609 kb on - strandat 471.667 kb on + strandat 471.667 kb on + strandat 471.668 kb on - strandat 472.089 kb on - strand, within SMa0854

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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468,960 + -0.2
468,990 - -0.6
469,012 - -2.8
469,012 - +1.5
469,034 + -0.2
469,049 + -3.9
469,049 + +0.2
469,050 - +2.8
469,055 + +1.2
469,055 + +0.3
469,056 - -0.5
469,168 - -0.5
469,198 - +0.7
469,237 + +1.0
469,275 + -0.2
469,290 + +2.0
469,435 + -0.9
469,435 + +0.6
469,436 - +3.3
469,439 + -0.0
469,440 - -1.1
469,440 - -3.1
469,440 - +0.5
469,532 + -1.1
469,635 + +1.7
469,635 + -2.1
469,713 + SMa0852 0.29 -0.3
469,716 + SMa0852 0.30 +2.2
469,717 - SMa0852 0.30 -2.4
469,808 + SMa0852 0.63 +0.2
469,808 + SMa0852 0.63 +0.1
469,809 - SMa0852 0.63 +0.8
469,809 - SMa0852 0.63 +0.5
469,872 + SMa0852 0.85 +0.5
469,901 - +0.7
469,950 + -0.8
470,055 + SMa0853 0.12 +0.4
470,262 - SMa0853 0.29 +1.3
470,262 - SMa0853 0.29 -1.2
470,313 + SMa0853 0.33 -3.2
470,313 + SMa0853 0.33 -0.3
470,580 + SMa0853 0.55 -2.3
470,580 + SMa0853 0.55 +2.1
470,581 - SMa0853 0.55 -1.2
470,581 - SMa0853 0.55 -0.2
470,619 - SMa0853 0.58 -0.0
470,780 + SMa0853 0.72 -0.1
470,830 + SMa0853 0.76 -3.9
470,830 + SMa0853 0.76 -3.2
470,865 - SMa0853 0.79 +2.3
470,987 + SMa0853 0.89 -2.7
471,341 - -1.7
471,447 + -1.2
471,481 + -2.7
471,567 + -1.0
471,589 - +1.4
471,609 - +2.1
471,667 + -0.3
471,667 + -1.3
471,668 - +0.6
472,089 - SMa0854 0.64 -1.4

Or see this region's nucleotide sequence