Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0673 and SMa0674 overlap by 8 nucleotides SMa0674 and SMa0675 overlap by 4 nucleotides SMa0675 and SMa0677 are separated by 204 nucleotides
SMa0673: SMa0673 - TRm3 transposase, at 358,810 to 360,012
SMa0673
SMa0674: SMa0674 - hypothetical protein, at 360,005 to 360,349
SMa0674
SMa0675: SMa0675 - Ca2+/H+ antiporter, at 360,346 to 361,491
SMa0675
SMa0677: SMa0677 - ABC transporter substrate-binding protein, at 361,696 to 362,637
SMa0677
Position (kb) 360
361
362 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 360.129 kb on + strand, within SMa0674 at 360.130 kb on - strand, within SMa0674 at 360.392 kb on - strand at 360.392 kb on - strand at 360.425 kb on + strand at 360.425 kb on + strand at 360.540 kb on - strand, within SMa0675 at 360.540 kb on - strand, within SMa0675 at 360.718 kb on + strand, within SMa0675 at 360.718 kb on + strand, within SMa0675 at 360.719 kb on - strand, within SMa0675 at 360.905 kb on + strand, within SMa0675 at 360.906 kb on - strand, within SMa0675 at 360.914 kb on - strand, within SMa0675 at 361.123 kb on - strand, within SMa0675 at 361.123 kb on - strand, within SMa0675 at 361.166 kb on + strand, within SMa0675 at 361.167 kb on - strand, within SMa0675 at 361.195 kb on - strand, within SMa0675 at 361.197 kb on + strand, within SMa0675 at 361.197 kb on + strand, within SMa0675 at 361.197 kb on + strand, within SMa0675 at 361.337 kb on - strand, within SMa0675 at 361.341 kb on + strand, within SMa0675 at 361.341 kb on + strand, within SMa0675 at 361.341 kb on + strand, within SMa0675 at 361.341 kb on + strand, within SMa0675 at 361.342 kb on - strand, within SMa0675 at 361.342 kb on - strand, within SMa0675 at 361.342 kb on - strand, within SMa0675 at 361.342 kb on - strand, within SMa0675 at 361.384 kb on + strand at 361.385 kb on - strand at 361.385 kb on - strand at 361.385 kb on - strand at 361.574 kb on - strand at 361.737 kb on + strand at 361.872 kb on - strand, within SMa0677 at 361.872 kb on - strand, within SMa0677 at 361.961 kb on - strand, within SMa0677 at 362.003 kb on + strand, within SMa0677 at 362.004 kb on - strand, within SMa0677 at 362.048 kb on - strand, within SMa0677 at 362.076 kb on + strand, within SMa0677 at 362.210 kb on - strand, within SMa0677 at 362.317 kb on + strand, within SMa0677 at 362.317 kb on + strand, within SMa0677
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 360,129 + SMa0674 0.36 -3.0 360,130 - SMa0674 0.36 -2.5 360,392 - +0.2 360,392 - +2.7 360,425 + -0.3 360,425 + -0.2 360,540 - SMa0675 0.17 +1.7 360,540 - SMa0675 0.17 -2.0 360,718 + SMa0675 0.32 +0.1 360,718 + SMa0675 0.32 -2.2 360,719 - SMa0675 0.33 +1.7 360,905 + SMa0675 0.49 -2.1 360,906 - SMa0675 0.49 +0.1 360,914 - SMa0675 0.50 +0.4 361,123 - SMa0675 0.68 -1.0 361,123 - SMa0675 0.68 -1.4 361,166 + SMa0675 0.72 +0.7 361,167 - SMa0675 0.72 -0.6 361,195 - SMa0675 0.74 +2.7 361,197 + SMa0675 0.74 +0.2 361,197 + SMa0675 0.74 +6.0 361,197 + SMa0675 0.74 +2.1 361,337 - SMa0675 0.86 +0.6 361,341 + SMa0675 0.87 +1.1 361,341 + SMa0675 0.87 +0.0 361,341 + SMa0675 0.87 -0.0 361,341 + SMa0675 0.87 +0.8 361,342 - SMa0675 0.87 -0.2 361,342 - SMa0675 0.87 -0.3 361,342 - SMa0675 0.87 +1.1 361,342 - SMa0675 0.87 +1.1 361,384 + -0.7 361,385 - +0.5 361,385 - -3.3 361,385 - +0.1 361,574 - +0.4 361,737 + -0.3 361,872 - SMa0677 0.19 -0.6 361,872 - SMa0677 0.19 -0.9 361,961 - SMa0677 0.28 +0.7 362,003 + SMa0677 0.33 +0.4 362,004 - SMa0677 0.33 +1.2 362,048 - SMa0677 0.37 +0.7 362,076 + SMa0677 0.40 +2.3 362,210 - SMa0677 0.55 +0.3 362,317 + SMa0677 0.66 +0.3 362,317 + SMa0677 0.66 -0.2
Or see this region's nucleotide sequence