Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21560 and SM_b21561 are separated by 4 nucleotides SM_b21561 and SM_b21562 are separated by 36 nucleotides SM_b21562 and SM_b21563 are separated by 130 nucleotides SM_b21563 and SM_b21564 are separated by 130 nucleotides SM_b21564 and SM_b21565 overlap by 4 nucleotides
SM_b21560: SM_b21560 - two component sensor histidine kinase, at 1,100,294 to 1,101,556
_b21560
SM_b21561: SM_b21561 - two component response regulator protein, at 1,101,561 to 1,102,259
_b21561
SM_b21562: SM_b21562 - hypothetical protein, at 1,102,296 to 1,102,847
_b21562
SM_b21563: SM_b21563 - transcriptional regulator, at 1,102,978 to 1,103,343
_b21563
SM_b21564: SM_b21564 - hypothetical protein, at 1,103,474 to 1,103,791
_b21564
SM_b21565: SM_b21565 - hypothetical protein, at 1,103,788 to 1,104,534
_b21565
Position (kb)
1102
1103 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1101.324 kb on + strand, within SM_b21560 at 1101.325 kb on - strand, within SM_b21560 at 1101.325 kb on - strand, within SM_b21560 at 1101.325 kb on - strand, within SM_b21560 at 1101.562 kb on + strand at 1101.569 kb on + strand at 1101.581 kb on - strand at 1101.614 kb on + strand at 1101.806 kb on + strand, within SM_b21561 at 1101.806 kb on + strand, within SM_b21561 at 1101.807 kb on - strand, within SM_b21561 at 1101.807 kb on - strand, within SM_b21561 at 1101.964 kb on + strand, within SM_b21561 at 1101.965 kb on - strand, within SM_b21561 at 1102.170 kb on - strand, within SM_b21561 at 1102.181 kb on - strand, within SM_b21561 at 1102.199 kb on - strand at 1102.293 kb on + strand at 1102.298 kb on - strand at 1102.631 kb on + strand, within SM_b21562 at 1102.632 kb on - strand, within SM_b21562 at 1102.649 kb on + strand, within SM_b21562 at 1102.649 kb on + strand, within SM_b21562 at 1102.650 kb on - strand, within SM_b21562 at 1102.650 kb on - strand, within SM_b21562 at 1102.930 kb on - strand at 1102.939 kb on + strand at 1102.955 kb on + strand at 1102.979 kb on + strand at 1103.343 kb on + strand at 1103.343 kb on + strand at 1103.344 kb on - strand at 1103.344 kb on - strand at 1103.344 kb on - strand at 1103.344 kb on - strand at 1103.353 kb on + strand at 1103.353 kb on + strand at 1103.354 kb on - strand at 1103.417 kb on + strand at 1103.417 kb on + strand at 1103.418 kb on - strand at 1103.418 kb on - strand at 1103.458 kb on + strand at 1103.459 kb on - strand at 1103.459 kb on - strand at 1103.507 kb on - strand, within SM_b21564 at 1103.537 kb on + strand, within SM_b21564 at 1103.538 kb on - strand, within SM_b21564 at 1103.538 kb on - strand, within SM_b21564 at 1103.546 kb on - strand, within SM_b21564 at 1103.551 kb on - strand, within SM_b21564 at 1103.653 kb on + strand, within SM_b21564 at 1103.685 kb on - strand, within SM_b21564 at 1103.749 kb on + strand, within SM_b21564 at 1103.749 kb on + strand, within SM_b21564 at 1103.750 kb on - strand, within SM_b21564
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 1,101,324 + SM_b21560 0.82 +0.8 1,101,325 - SM_b21560 0.82 +0.1 1,101,325 - SM_b21560 0.82 +1.4 1,101,325 - SM_b21560 0.82 +1.1 1,101,562 + -0.3 1,101,569 + -0.9 1,101,581 - -0.4 1,101,614 + +0.3 1,101,806 + SM_b21561 0.35 +0.4 1,101,806 + SM_b21561 0.35 +1.5 1,101,807 - SM_b21561 0.35 +0.1 1,101,807 - SM_b21561 0.35 +0.5 1,101,964 + SM_b21561 0.58 +0.4 1,101,965 - SM_b21561 0.58 -0.4 1,102,170 - SM_b21561 0.87 -4.6 1,102,181 - SM_b21561 0.89 -0.5 1,102,199 - -0.8 1,102,293 + +0.5 1,102,298 - -0.9 1,102,631 + SM_b21562 0.61 +1.2 1,102,632 - SM_b21562 0.61 +0.3 1,102,649 + SM_b21562 0.64 -0.6 1,102,649 + SM_b21562 0.64 +0.1 1,102,650 - SM_b21562 0.64 +4.4 1,102,650 - SM_b21562 0.64 +2.0 1,102,930 - +0.8 1,102,939 + -3.6 1,102,955 + -0.2 1,102,979 + +0.1 1,103,343 + -0.7 1,103,343 + +0.5 1,103,344 - -1.0 1,103,344 - -2.7 1,103,344 - -0.7 1,103,344 - +1.5 1,103,353 + +0.5 1,103,353 + -0.0 1,103,354 - -2.3 1,103,417 + +1.5 1,103,417 + +0.7 1,103,418 - -0.1 1,103,418 - -2.8 1,103,458 + -1.7 1,103,459 - +0.7 1,103,459 - -1.9 1,103,507 - SM_b21564 0.10 -0.0 1,103,537 + SM_b21564 0.20 -1.6 1,103,538 - SM_b21564 0.20 -0.8 1,103,538 - SM_b21564 0.20 -0.2 1,103,546 - SM_b21564 0.23 -1.3 1,103,551 - SM_b21564 0.24 -2.2 1,103,653 + SM_b21564 0.56 -2.0 1,103,685 - SM_b21564 0.66 +0.4 1,103,749 + SM_b21564 0.86 +0.4 1,103,749 + SM_b21564 0.86 -1.7 1,103,750 - SM_b21564 0.87 +0.2
Or see this region's nucleotide sequence