Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21562

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21560 and SM_b21561 are separated by 4 nucleotidesSM_b21561 and SM_b21562 are separated by 36 nucleotidesSM_b21562 and SM_b21563 are separated by 130 nucleotidesSM_b21563 and SM_b21564 are separated by 130 nucleotidesSM_b21564 and SM_b21565 overlap by 4 nucleotides SM_b21560: SM_b21560 - two component sensor histidine kinase, at 1,100,294 to 1,101,556 _b21560 SM_b21561: SM_b21561 - two component response regulator protein, at 1,101,561 to 1,102,259 _b21561 SM_b21562: SM_b21562 - hypothetical protein, at 1,102,296 to 1,102,847 _b21562 SM_b21563: SM_b21563 - transcriptional regulator, at 1,102,978 to 1,103,343 _b21563 SM_b21564: SM_b21564 - hypothetical protein, at 1,103,474 to 1,103,791 _b21564 SM_b21565: SM_b21565 - hypothetical protein, at 1,103,788 to 1,104,534 _b21565 Position (kb) 1102 1103Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1101.324 kb on + strand, within SM_b21560at 1101.325 kb on - strand, within SM_b21560at 1101.325 kb on - strand, within SM_b21560at 1101.325 kb on - strand, within SM_b21560at 1101.562 kb on + strandat 1101.569 kb on + strandat 1101.581 kb on - strandat 1101.614 kb on + strandat 1101.806 kb on + strand, within SM_b21561at 1101.806 kb on + strand, within SM_b21561at 1101.807 kb on - strand, within SM_b21561at 1101.807 kb on - strand, within SM_b21561at 1101.964 kb on + strand, within SM_b21561at 1101.965 kb on - strand, within SM_b21561at 1102.170 kb on - strand, within SM_b21561at 1102.181 kb on - strand, within SM_b21561at 1102.199 kb on - strandat 1102.293 kb on + strandat 1102.298 kb on - strandat 1102.631 kb on + strand, within SM_b21562at 1102.632 kb on - strand, within SM_b21562at 1102.649 kb on + strand, within SM_b21562at 1102.649 kb on + strand, within SM_b21562at 1102.650 kb on - strand, within SM_b21562at 1102.650 kb on - strand, within SM_b21562at 1102.930 kb on - strandat 1102.939 kb on + strandat 1102.955 kb on + strandat 1102.979 kb on + strandat 1103.343 kb on + strandat 1103.343 kb on + strandat 1103.344 kb on - strandat 1103.344 kb on - strandat 1103.344 kb on - strandat 1103.344 kb on - strandat 1103.353 kb on + strandat 1103.353 kb on + strandat 1103.354 kb on - strandat 1103.417 kb on + strandat 1103.417 kb on + strandat 1103.418 kb on - strandat 1103.418 kb on - strandat 1103.458 kb on + strandat 1103.459 kb on - strandat 1103.459 kb on - strandat 1103.507 kb on - strand, within SM_b21564at 1103.537 kb on + strand, within SM_b21564at 1103.538 kb on - strand, within SM_b21564at 1103.538 kb on - strand, within SM_b21564at 1103.546 kb on - strand, within SM_b21564at 1103.551 kb on - strand, within SM_b21564at 1103.653 kb on + strand, within SM_b21564at 1103.685 kb on - strand, within SM_b21564at 1103.749 kb on + strand, within SM_b21564at 1103.749 kb on + strand, within SM_b21564at 1103.750 kb on - strand, within SM_b21564

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,101,324 + SM_b21560 0.82 +0.8
1,101,325 - SM_b21560 0.82 +0.1
1,101,325 - SM_b21560 0.82 +1.4
1,101,325 - SM_b21560 0.82 +1.1
1,101,562 + -0.3
1,101,569 + -0.9
1,101,581 - -0.4
1,101,614 + +0.3
1,101,806 + SM_b21561 0.35 +0.4
1,101,806 + SM_b21561 0.35 +1.5
1,101,807 - SM_b21561 0.35 +0.1
1,101,807 - SM_b21561 0.35 +0.5
1,101,964 + SM_b21561 0.58 +0.4
1,101,965 - SM_b21561 0.58 -0.4
1,102,170 - SM_b21561 0.87 -4.6
1,102,181 - SM_b21561 0.89 -0.5
1,102,199 - -0.8
1,102,293 + +0.5
1,102,298 - -0.9
1,102,631 + SM_b21562 0.61 +1.2
1,102,632 - SM_b21562 0.61 +0.3
1,102,649 + SM_b21562 0.64 -0.6
1,102,649 + SM_b21562 0.64 +0.1
1,102,650 - SM_b21562 0.64 +4.4
1,102,650 - SM_b21562 0.64 +2.0
1,102,930 - +0.8
1,102,939 + -3.6
1,102,955 + -0.2
1,102,979 + +0.1
1,103,343 + -0.7
1,103,343 + +0.5
1,103,344 - -1.0
1,103,344 - -2.7
1,103,344 - -0.7
1,103,344 - +1.5
1,103,353 + +0.5
1,103,353 + -0.0
1,103,354 - -2.3
1,103,417 + +1.5
1,103,417 + +0.7
1,103,418 - -0.1
1,103,418 - -2.8
1,103,458 + -1.7
1,103,459 - +0.7
1,103,459 - -1.9
1,103,507 - SM_b21564 0.10 -0.0
1,103,537 + SM_b21564 0.20 -1.6
1,103,538 - SM_b21564 0.20 -0.8
1,103,538 - SM_b21564 0.20 -0.2
1,103,546 - SM_b21564 0.23 -1.3
1,103,551 - SM_b21564 0.24 -2.2
1,103,653 + SM_b21564 0.56 -2.0
1,103,685 - SM_b21564 0.66 +0.4
1,103,749 + SM_b21564 0.86 +0.4
1,103,749 + SM_b21564 0.86 -1.7
1,103,750 - SM_b21564 0.87 +0.2

Or see this region's nucleotide sequence